Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0288.Seq
         (656 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4029| Best HMM Match : No HMM Matches (HMM E-Value=.)               89   4e-18
SB_1645| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.27 
SB_31268| Best HMM Match : zf-C2H2 (HMM E-Value=5.04467e-44)           30   1.4  
SB_34398| Best HMM Match : eIF-3c_C (HMM E-Value=0.91)                 29   2.5  
SB_9634| Best HMM Match : zf-C2H2 (HMM E-Value=0)                      29   4.4  

>SB_4029| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 417

 Score = 88.6 bits (210), Expect = 4e-18
 Identities = 43/104 (41%), Positives = 67/104 (64%), Gaps = 3/104 (2%)
 Frame = +3

Query: 210 KTASKISRQRLLHNRDALIVDMLV--RNPCMKEDDICELLKFERKMLRARISILKNDKFI 383
           K  +K+  +         I+++L   ++PC+KEDD+ +L++F+++ LR  +  LKNDK I
Sbjct: 19  KRLAKVVVRGFYDTEQVAIINVLTNAKHPCVKEDDLMDLVRFDKRQLRQALVRLKNDKLI 78

Query: 384 QVRLKMETGLD-GKAQKVNYYFINYKTFVNVVKYKLDLMRKRLK 512
           + R+  E   D G     NYYFIN+K FVNVVKYKLD +RK+++
Sbjct: 79  KQRIHKEKAPDTGMTLTFNYYFINFKVFVNVVKYKLDHVRKKIE 122



 Score = 35.9 bits (79), Expect = 0.029
 Identities = 15/32 (46%), Positives = 23/32 (71%)
 Frame = +1

Query: 175 EERYVTEVPSSLKQLARLVVRGFYTIEMHSLL 270
           E   +TE+P  LK+LA++VVRGFY  E  +++
Sbjct: 7   EPELLTEIPPVLKRLAKVVVRGFYDTEQVAII 38



 Score = 32.3 bits (70), Expect = 0.36
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 506 VETEERDATSRASFKCPACGKTFTDLEV 589
           +E++E+ A +R SF C  C   ++DLEV
Sbjct: 121 IESDEKQAKNRPSFVCSECHNKYSDLEV 148


>SB_1645| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 244

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 17/33 (51%), Positives = 25/33 (75%)
 Frame = -3

Query: 144 MAAIEKVKVVVLGDSGMLISSNFVVVHLL*HIE 46
           MAA+EKV++ V+GDSG+  +S   +VHL+ H E
Sbjct: 1   MAAVEKVRIAVVGDSGVGKTS---LVHLICHEE 30


>SB_31268| Best HMM Match : zf-C2H2 (HMM E-Value=5.04467e-44)
          Length = 454

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 491 SYEEAVETEERDATSRASFKCPACGKTFTD 580
           S+  AV+   R  T    F+CP C K F D
Sbjct: 376 SHSSAVKNHMRTHTGEKPFQCPICNKKFAD 405



 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 506 VETEERDATSRASFKCPACGKTF 574
           ++T +R  T    FKCP CG+ F
Sbjct: 325 LKTHQRVHTGEKPFKCPICGRPF 347


>SB_34398| Best HMM Match : eIF-3c_C (HMM E-Value=0.91)
          Length = 278

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/33 (45%), Positives = 22/33 (66%)
 Frame = +3

Query: 318 LLKFERKMLRARISILKNDKFIQVRLKMETGLD 416
           LLK E K+LR+++  L +DK  +VR   ET +D
Sbjct: 89  LLKEENKVLRSQVDGLAHDKTGEVRSVAETSVD 121


>SB_9634| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 587

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 494 YEEAVETEERDATSRASFKCPACGKTFTDLEVR 592
           ++ + + E   +T    +KCP C K F+D E R
Sbjct: 170 FKSSHQLERHKSTHARVYKCPHCKKVFSDKEKR 202


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,975,797
Number of Sequences: 59808
Number of extensions: 309409
Number of successful extensions: 1045
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)