Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0288.Seq
(656 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U72892-1|AAD00187.1| 429|Drosophila melanogaster TFIIE large su... 159 3e-39
AY119499-1|AAM50153.1| 429|Drosophila melanogaster GH11150p pro... 159 3e-39
AE014296-2000|AAF50029.1| 429|Drosophila melanogaster CG10415-P... 159 3e-39
X03414-1|CAA27148.1| 466|Drosophila melanogaster Kr polypeptide... 31 1.8
BT029074-1|ABJ17007.1| 236|Drosophila melanogaster IP09127p pro... 30 2.4
BT028857-1|ABI34238.2| 315|Drosophila melanogaster RT01133p pro... 30 2.4
BT028825-1|ABI34206.2| 315|Drosophila melanogaster RT01033p pro... 30 2.4
AY071280-1|AAL48902.1| 501|Drosophila melanogaster RE30918p pro... 30 2.4
AE014298-1130|AAF46329.1| 344|Drosophila melanogaster CG2120-PA... 30 2.4
AE013599-4029|AAF47321.1| 502|Drosophila melanogaster CG3340-PA... 30 2.4
AY071304-1|AAL48926.1| 580|Drosophila melanogaster RE33093p pro... 28 9.7
AE013599-2750|AAF57650.1| 580|Drosophila melanogaster CG15073-P... 28 9.7
>U72892-1|AAD00187.1| 429|Drosophila melanogaster TFIIE large
subunit protein.
Length = 429
Score = 159 bits (386), Expect = 3e-39
Identities = 76/96 (79%), Positives = 87/96 (90%), Gaps = 2/96 (2%)
Frame = +3
Query: 255 DALIVDMLVRNPCMKEDDICELLKFERKMLRARISILKNDKFIQVRLKMETGLDGKAQKV 434
DALI+DMLVRNPCMKEDDI ELL+FE+K LRARI+ L+ DKFIQ+RLKMETG DGKAQKV
Sbjct: 44 DALIIDMLVRNPCMKEDDIGELLRFEKKQLRARITTLRTDKFIQIRLKMETGPDGKAQKV 103
Query: 435 NYYFINYKTFVNVVKYKLDLMRKRL--KQRNVTLQA 536
NYYFINYKTFVNVVKYKLDLMRKR+ ++R+ T +A
Sbjct: 104 NYYFINYKTFVNVVKYKLDLMRKRMETEERDATSRA 139
Score = 54.0 bits (124), Expect = 2e-07
Identities = 25/28 (89%), Positives = 27/28 (96%)
Frame = +1
Query: 172 TEERYVTEVPSSLKQLARLVVRGFYTIE 255
TE RYVTEVPSSLKQLARLVVRGFY++E
Sbjct: 16 TEVRYVTEVPSSLKQLARLVVRGFYSLE 43
Score = 53.6 bits (123), Expect = 2e-07
Identities = 23/27 (85%), Positives = 25/27 (92%)
Frame = +2
Query: 506 VETEERDATSRASFKCPACGKTFTDLE 586
+ETEERDATSRASFKC +C KTFTDLE
Sbjct: 128 METEERDATSRASFKCSSCSKTFTDLE 154
>AY119499-1|AAM50153.1| 429|Drosophila melanogaster GH11150p
protein.
Length = 429
Score = 159 bits (386), Expect = 3e-39
Identities = 76/96 (79%), Positives = 87/96 (90%), Gaps = 2/96 (2%)
Frame = +3
Query: 255 DALIVDMLVRNPCMKEDDICELLKFERKMLRARISILKNDKFIQVRLKMETGLDGKAQKV 434
DALI+DMLVRNPCMKEDDI ELL+FE+K LRARI+ L+ DKFIQ+RLKMETG DGKAQKV
Sbjct: 44 DALIIDMLVRNPCMKEDDIGELLRFEKKQLRARITTLRTDKFIQIRLKMETGPDGKAQKV 103
Query: 435 NYYFINYKTFVNVVKYKLDLMRKRL--KQRNVTLQA 536
NYYFINYKTFVNVVKYKLDLMRKR+ ++R+ T +A
Sbjct: 104 NYYFINYKTFVNVVKYKLDLMRKRMETEERDATSRA 139
Score = 54.0 bits (124), Expect = 2e-07
Identities = 25/28 (89%), Positives = 27/28 (96%)
Frame = +1
Query: 172 TEERYVTEVPSSLKQLARLVVRGFYTIE 255
TE RYVTEVPSSLKQLARLVVRGFY++E
Sbjct: 16 TEVRYVTEVPSSLKQLARLVVRGFYSLE 43
Score = 53.6 bits (123), Expect = 2e-07
Identities = 23/27 (85%), Positives = 25/27 (92%)
Frame = +2
Query: 506 VETEERDATSRASFKCPACGKTFTDLE 586
+ETEERDATSRASFKC +C KTFTDLE
Sbjct: 128 METEERDATSRASFKCSSCSKTFTDLE 154
>AE014296-2000|AAF50029.1| 429|Drosophila melanogaster CG10415-PA
protein.
Length = 429
Score = 159 bits (386), Expect = 3e-39
Identities = 76/96 (79%), Positives = 87/96 (90%), Gaps = 2/96 (2%)
Frame = +3
Query: 255 DALIVDMLVRNPCMKEDDICELLKFERKMLRARISILKNDKFIQVRLKMETGLDGKAQKV 434
DALI+DMLVRNPCMKEDDI ELL+FE+K LRARI+ L+ DKFIQ+RLKMETG DGKAQKV
Sbjct: 44 DALIIDMLVRNPCMKEDDIGELLRFEKKQLRARITTLRTDKFIQIRLKMETGPDGKAQKV 103
Query: 435 NYYFINYKTFVNVVKYKLDLMRKRL--KQRNVTLQA 536
NYYFINYKTFVNVVKYKLDLMRKR+ ++R+ T +A
Sbjct: 104 NYYFINYKTFVNVVKYKLDLMRKRMETEERDATSRA 139
Score = 54.0 bits (124), Expect = 2e-07
Identities = 25/28 (89%), Positives = 27/28 (96%)
Frame = +1
Query: 172 TEERYVTEVPSSLKQLARLVVRGFYTIE 255
TE RYVTEVPSSLKQLARLVVRGFY++E
Sbjct: 16 TEVRYVTEVPSSLKQLARLVVRGFYSLE 43
Score = 53.6 bits (123), Expect = 2e-07
Identities = 23/27 (85%), Positives = 25/27 (92%)
Frame = +2
Query: 506 VETEERDATSRASFKCPACGKTFTDLE 586
+ETEERDATSRASFKC +C KTFTDLE
Sbjct: 128 METEERDATSRASFKCSSCSKTFTDLE 154
>X03414-1|CAA27148.1| 466|Drosophila melanogaster Kr polypeptide
protein.
Length = 466
Score = 30.7 bits (66), Expect = 1.8
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 494 YEEAVETEERDATSRASFKCPACGKTFT 577
Y+ ++ ER T F+CP C K FT
Sbjct: 233 YKHVLQNHERTHTGEKPFECPECDKRFT 260
>BT029074-1|ABJ17007.1| 236|Drosophila melanogaster IP09127p
protein.
Length = 236
Score = 30.3 bits (65), Expect = 2.4
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +2
Query: 509 ETEERDATSRASFKCPACGKTFTD 580
E E+RD TS SF CP C + TD
Sbjct: 143 EQEQRD-TSALSFTCPVCSRVLTD 165
>BT028857-1|ABI34238.2| 315|Drosophila melanogaster RT01133p
protein.
Length = 315
Score = 30.3 bits (65), Expect = 2.4
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +2
Query: 509 ETEERDATSRASFKCPACGKTFTD 580
E E+RD TS SF CP C + TD
Sbjct: 222 EQEQRD-TSALSFTCPVCSRVLTD 244
>BT028825-1|ABI34206.2| 315|Drosophila melanogaster RT01033p
protein.
Length = 315
Score = 30.3 bits (65), Expect = 2.4
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +2
Query: 509 ETEERDATSRASFKCPACGKTFTD 580
E E+RD TS SF CP C + TD
Sbjct: 222 EQEQRD-TSALSFTCPVCSRVLTD 244
>AY071280-1|AAL48902.1| 501|Drosophila melanogaster RE30918p
protein.
Length = 501
Score = 30.3 bits (65), Expect = 2.4
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 494 YEEAVETEERDATSRASFKCPACGKTFT 577
Y+ ++ ER T F+CP C K FT
Sbjct: 232 YKHVLQNHERTHTGEKPFECPECHKRFT 259
>AE014298-1130|AAF46329.1| 344|Drosophila melanogaster CG2120-PA
protein.
Length = 344
Score = 30.3 bits (65), Expect = 2.4
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +2
Query: 509 ETEERDATSRASFKCPACGKTFTD 580
E E+RD TS SF CP C + TD
Sbjct: 251 EQEQRD-TSALSFTCPVCSRVLTD 273
>AE013599-4029|AAF47321.1| 502|Drosophila melanogaster CG3340-PA
protein.
Length = 502
Score = 30.3 bits (65), Expect = 2.4
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 494 YEEAVETEERDATSRASFKCPACGKTFT 577
Y+ ++ ER T F+CP C K FT
Sbjct: 233 YKHVLQNHERTHTGEKPFECPECHKRFT 260
>AY071304-1|AAL48926.1| 580|Drosophila melanogaster RE33093p
protein.
Length = 580
Score = 28.3 bits (60), Expect = 9.7
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Frame = +2
Query: 350 KNFYSQK*QI--HSGQTENGDRTGRKS-TKS*LLFHK----LQDFRKRR*V*IRSYEEAV 508
KN +S K + H+G D G+ S +S +L H+ L D + V +++++A+
Sbjct: 418 KNKHSLKKHVRRHNGTAATCDLCGKVSPNRSAMLSHQRYVHLTDRKHECSVCNKAFKKAI 477
Query: 509 ETEERDA--TSRASFKCPACGKTF 574
E T +KCP C KTF
Sbjct: 478 TLREHMTMHTGEVLYKCPHCPKTF 501
>AE013599-2750|AAF57650.1| 580|Drosophila melanogaster CG15073-PA
protein.
Length = 580
Score = 28.3 bits (60), Expect = 9.7
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Frame = +2
Query: 350 KNFYSQK*QI--HSGQTENGDRTGRKS-TKS*LLFHK----LQDFRKRR*V*IRSYEEAV 508
KN +S K + H+G D G+ S +S +L H+ L D + V +++++A+
Sbjct: 418 KNKHSLKKHVRRHNGTAATCDLCGKVSPNRSAMLSHQRYVHLTDRKHECSVCNKAFKKAI 477
Query: 509 ETEERDA--TSRASFKCPACGKTF 574
E T +KCP C KTF
Sbjct: 478 TLREHMTMHTGEVLYKCPHCPKTF 501
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,311,190
Number of Sequences: 53049
Number of extensions: 435129
Number of successful extensions: 1825
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1825
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2806815600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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