Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0288.Seq
(656 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82287-4|CAB05314.1| 433|Caenorhabditis elegans Hypothetical pr... 68 7e-12
Y08816-1|CAA70050.2| 433|Caenorhabditis elegans TFIIE-alpha pro... 68 7e-12
U88311-9|AAB42349.3| 407|Caenorhabditis elegans Kinesin cargo a... 30 1.7
DQ178243-1|ABA18182.1| 407|Caenorhabditis elegans kinesin 1 car... 30 1.7
Z83223-3|CAB05717.2| 385|Caenorhabditis elegans Hypothetical pr... 29 2.9
U00065-2|AAL27237.1| 672|Caenorhabditis elegans Prion-like-(q/n... 27 8.9
AC024202-5|AAP86609.1| 827|Caenorhabditis elegans C. elegans AP... 27 8.9
AC024202-3|AAF36038.2| 955|Caenorhabditis elegans C. elegans AP... 27 8.9
>Z82287-4|CAB05314.1| 433|Caenorhabditis elegans Hypothetical
protein ZK550.4 protein.
Length = 433
Score = 67.7 bits (158), Expect = 7e-12
Identities = 28/86 (32%), Positives = 58/86 (67%)
Frame = +3
Query: 261 LIVDMLVRNPCMKEDDICELLKFERKMLRARISILKNDKFIQVRLKMETGLDGKAQKVNY 440
+IV ++R C++E+++ ++F++KMLR ++ LK +K ++ R + + + + +
Sbjct: 45 IIVYHIMRAQCIREENLKARIQFDQKMLRQLLASLKAEKLVKERTITQKNENNRTVSIIF 104
Query: 441 YFINYKTFVNVVKYKLDLMRKRLKQR 518
Y+INY+ +NVV+YK+D MR++L+ R
Sbjct: 105 YYINYRAVLNVVRYKIDHMRQKLESR 130
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +2
Query: 500 EAVETEERDATSRASFKCPACGKTFTDLEVRII 598
+ +E+ E+ T+RA ++C AC ++ LE+ I
Sbjct: 125 QKLESREQMDTNRAHYRCGACQSSYDMLEINRI 157
>Y08816-1|CAA70050.2| 433|Caenorhabditis elegans TFIIE-alpha
protein protein.
Length = 433
Score = 67.7 bits (158), Expect = 7e-12
Identities = 28/86 (32%), Positives = 58/86 (67%)
Frame = +3
Query: 261 LIVDMLVRNPCMKEDDICELLKFERKMLRARISILKNDKFIQVRLKMETGLDGKAQKVNY 440
+IV ++R C++E+++ ++F++KMLR ++ LK +K ++ R + + + + +
Sbjct: 45 IIVYHIMRAQCIREENLKARIQFDQKMLRQLLASLKAEKLVKERTITQKNENNRTVSIIF 104
Query: 441 YFINYKTFVNVVKYKLDLMRKRLKQR 518
Y+INY+ +NVV+YK+D MR++L+ R
Sbjct: 105 YYINYRAVLNVVRYKIDHMRQKLESR 130
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +2
Query: 500 EAVETEERDATSRASFKCPACGKTFTDLEVRII 598
+ +E+ E+ T+RA ++C AC ++ LE+ I
Sbjct: 125 QKLESREQMDTNRAHYRCGACQSSYDMLEINRI 157
>U88311-9|AAB42349.3| 407|Caenorhabditis elegans Kinesin cargo
adaptor protein 1 protein.
Length = 407
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +3
Query: 240 LLHNRDALIVDMLVRNPCMKEDDICELLKFERKMLRARISILKNDKF 380
L +D VD +++ C + +D+ + KF K R +S +KND+F
Sbjct: 72 LKKKQDKETVDEIMK--CFRNNDVDGMEKFVEKKTRESVSSMKNDEF 116
>DQ178243-1|ABA18182.1| 407|Caenorhabditis elegans kinesin 1 cargo
adaptor alternativevariant a protein.
Length = 407
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +3
Query: 240 LLHNRDALIVDMLVRNPCMKEDDICELLKFERKMLRARISILKNDKF 380
L +D VD +++ C + +D+ + KF K R +S +KND+F
Sbjct: 72 LKKKQDKETVDEIMK--CFRNNDVDGMEKFVEKKTRESVSSMKNDEF 116
>Z83223-3|CAB05717.2| 385|Caenorhabditis elegans Hypothetical
protein E01G4.5 protein.
Length = 385
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 207 FKTASKISRQRLLHNRDALIVDMLVRNPCMKEDDICELLKF 329
F+ SKI + +LHN A + D+ +R K + E KF
Sbjct: 5 FRGLSKIKNRTVLHNHVAKLFDIFIRGVIQKAEGDLEHTKF 45
>U00065-2|AAL27237.1| 672|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 25
protein.
Length = 672
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -2
Query: 553 TLETGSACSVTFLCFNRFLIRSNLYLTTFTKV 458
T++ G +CS + C N + +N+ ++TF V
Sbjct: 351 TVQVGGSCSFSQQCLNNAVCTNNICVSTFCSV 382
>AC024202-5|AAP86609.1| 827|Caenorhabditis elegans C. elegans APB-1
protein, isoform c protein.
Length = 827
Score = 27.5 bits (58), Expect = 8.9
Identities = 24/105 (22%), Positives = 49/105 (46%), Gaps = 9/105 (8%)
Frame = +3
Query: 237 RLLHNRDALI---VDMLVRNPCMKEDDICELLKFERKMLRARISILKNDKFIQ------V 389
RL H A++ V +L++ M D + + +K+ +++L + IQ +
Sbjct: 244 RLAHANAAVVLSTVKVLMKLIDMMPADSDFITQLTKKLAPPMVTLLSAEPEIQYVALRNI 303
Query: 390 RLKMETGLDGKAQKVNYYFINYKTFVNVVKYKLDLMRKRLKQRNV 524
L ++ D Q++ +F+ Y + V KLD+M + +Q N+
Sbjct: 304 NLIVQKRPDILKQEMKVFFVKYNDPIYVKMEKLDIMIRLAQQNNI 348
>AC024202-3|AAF36038.2| 955|Caenorhabditis elegans C. elegans APB-1
protein, isoform a protein.
Length = 955
Score = 27.5 bits (58), Expect = 8.9
Identities = 24/105 (22%), Positives = 49/105 (46%), Gaps = 9/105 (8%)
Frame = +3
Query: 237 RLLHNRDALI---VDMLVRNPCMKEDDICELLKFERKMLRARISILKNDKFIQ------V 389
RL H A++ V +L++ M D + + +K+ +++L + IQ +
Sbjct: 244 RLAHANAAVVLSTVKVLMKLIDMMPADSDFITQLTKKLAPPMVTLLSAEPEIQYVALRNI 303
Query: 390 RLKMETGLDGKAQKVNYYFINYKTFVNVVKYKLDLMRKRLKQRNV 524
L ++ D Q++ +F+ Y + V KLD+M + +Q N+
Sbjct: 304 NLIVQKRPDILKQEMKVFFVKYNDPIYVKMEKLDIMIRLAQQNNI 348
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,012,879
Number of Sequences: 27780
Number of extensions: 244379
Number of successful extensions: 842
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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