Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0288.Seq
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    26   0.36 
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      25   0.48 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   2.6  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   3.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   3.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   3.4  

>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 518 ERDATSRASFKCPACGKTFT 577
           ER  T    F+CP C K FT
Sbjct: 1   ERTHTGEKPFECPECHKRFT 20


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 447 INYKTFVNVVKYKLDLMRKRLKQRNVTLQAEPVSSVQ 557
           + YK    +++YK D+  +R KQ  ++   EP SS +
Sbjct: 170 VEYKP--EIMEYKPDVEEQRYKQVEISQMTEPSSSTK 204


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +2

Query: 521 RDATSRASFKCPACGKTFT 577
           R  T    + C ACGK FT
Sbjct: 196 RTHTGEKPYVCKACGKGFT 214


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 129 SQSQPFIEEIVVKHDGRALR 188
           +Q Q F E   + H GRALR
Sbjct: 187 NQFQDFSESFQILHAGRALR 206


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 129 SQSQPFIEEIVVKHDGRALR 188
           +Q Q F E   + H GRALR
Sbjct: 187 NQFQDFSESFQILHAGRALR 206


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 129 SQSQPFIEEIVVKHDGRALR 188
           +Q Q F E   + H GRALR
Sbjct: 187 NQFQDFSESFQILHAGRALR 206


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,310
Number of Sequences: 438
Number of extensions: 3021
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)