Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0287.Seq
(604 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharo... 30 0.30
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 29 0.52
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1... 28 0.91
SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|c... 27 2.1
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 27 2.8
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 3.7
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po... 26 3.7
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 26 4.9
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac... 26 4.9
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 25 6.4
SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S... 25 6.4
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch... 25 8.5
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 8.5
>SPAC24C9.12c |||glycine hydroxymethyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 29.9 bits (64), Expect = 0.30
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = -2
Query: 480 FEFLDVWLVSVHSSFVLFKSAQLVFQRALQAHSDGGDGVHLPLDPR 343
FE+ DV + H S + A + F+R L+ H G+ ++ L+ +
Sbjct: 231 FEYADVVTTTTHKSLRGPRGAMIFFRRGLRKHDKKGNPIYYDLEDK 276
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 29.1 bits (62), Expect = 0.52
Identities = 19/65 (29%), Positives = 35/65 (53%)
Frame = +3
Query: 51 VSWTLTLASRQPSARLTKNTRLSSTWYIKSNLLSSSTRSPAVWRTHTPLSQLMS*TASXR 230
V+ T L S+ PS+ + ++ LSST + +++ +S+ +PAV T + S ++
Sbjct: 865 VTSTTALTSQGPSSSVVSSS-LSSTTSLSTSIPVTSSVAPAVTSTGSETSSVVGSGTDSA 923
Query: 231 T*GSW 245
T SW
Sbjct: 924 TSSSW 928
Score = 27.5 bits (58), Expect = 1.6
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Frame = +3
Query: 9 SWICSSFIPSKKSQVSWTLTLASRQPSA-RLTKNTRLSSTWYIKSNLLSSSTRSPAVWRT 185
S I SS IPS S VS L+ ++ PS+ L+ ++ +S+ + ++ S S+ S ++ +
Sbjct: 562 SGISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSISSSISSS 621
Query: 186 HTPLSQLMS*TAS 224
T LS T+S
Sbjct: 622 STILSSPTPSTSS 634
>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 996
Score = 28.3 bits (60), Expect = 0.91
Identities = 14/49 (28%), Positives = 19/49 (38%)
Frame = +3
Query: 441 WSVRLQATHRGTRTHPPGCPGRQIFENRYSQYTMEALRVGWEQLLTSIN 587
W LQA HR R P NR + +G Q +T++N
Sbjct: 851 WGATLQAPHRAVRLQIEDLPSNVFVTNRGRGSPADQYDLGAAQFITAVN 899
>SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 449
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -1
Query: 160 VLLDNRFDLMYQVDDSLVFF 101
+LLD ++ L Y+V DSLVF+
Sbjct: 356 ILLDKKYALPYKVLDSLVFY 375
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 400 SLEDQLRRLKEYEAGVYAYKPHIEELE 480
S+ED+ + + YE+ + +PH+ ELE
Sbjct: 731 SVEDKKKEIGHYESLIKEKQPHLSELE 757
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -1
Query: 160 VLLDNRFDLMYQVDDSLVFFVSLAEGCLEASVSVHET 50
V +D L+YQ++ F+ + + CL+ + HET
Sbjct: 1029 VSMDTVCALIYQLNVDFAIFIPMIDKCLKMNGVTHET 1065
>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 320
Score = 26.2 bits (55), Expect = 3.7
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +3
Query: 21 SSFIPSKKSQVSWTLTLASRQPSARLTKNTRLSSTWYIKSNLLSSSTRSPAVWR 182
SSF+ K +T + S QPSAR + SS +S+L S S VW+
Sbjct: 269 SSFVADKWKMPMFTSNVTSAQPSARASPVQSNSSR--PRSSLDSKIINSHDVWK 320
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 533 IHNGGSSRRLGTAPDLDQPHHQRM 604
IH+ SSRR T+ L+QP + M
Sbjct: 38 IHSADSSRRRSTSSQLNQPSNYHM 61
>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 797
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 372 DGVHLPLDPRSDCVGLFCELPSQVLVVLL 286
DG+H+ +DP SD E+P Q ++LL
Sbjct: 21 DGIHIYIDPGSDDSLKHPEVPEQPDLILL 49
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 25.4 bits (53), Expect = 6.4
Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 5/100 (5%)
Frame = +2
Query: 278 FASNRT-TRTCEGSSQKRPTQSDLGSRGRWTPSP-PSEWACRALWKTSCADLKSTKLECT 451
F S +T T T SS R + + + R P PS +++ + KS K
Sbjct: 648 FPSRQTKTVTSANSSNIRDMEHTISDKPRSEPDAIPSS---KSMHSNKPFEEKSEKPTTK 704
Query: 452 LTSHTSRNSNAS---TRLSRKADLRKQVFTIHNGGSSRRL 562
N NAS L R+ DLRK+ NG +SR +
Sbjct: 705 RLVTNPSNVNASWHSNMLKRQEDLRKKKPLTDNGATSRHM 744
>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
Sad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 21 SSFIPSKKSQVSWTLTLASRQPSARLTKNTRLSSTW 128
S+FIP S +L + +PS LT N ++ W
Sbjct: 339 SAFIPRFTSYFFDSLVVRGHEPSIALTPNNAVAMCW 374
>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 411
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -2
Query: 477 EFLDVWLVSVHSSFVL 430
E L+ WLV +HS+F L
Sbjct: 170 EILNEWLVEIHSNFCL 185
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = -2
Query: 336 CVGLFCELPSQVLVVLLLAKLCGQRRVGCGTSCL 235
C F PSQ+ ++ L LC + G CL
Sbjct: 1735 CKEWFLRYPSQITLLSLRCTLCHEIETGIADCCL 1768
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,658,595
Number of Sequences: 5004
Number of extensions: 55271
Number of successful extensions: 218
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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