Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0287.Seq
(604 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2411| Best HMM Match : No HMM Matches (HMM E-Value=.) 79 3e-15
SB_7706| Best HMM Match : Spectrin (HMM E-Value=0) 42 4e-04
SB_10690| Best HMM Match : Pkinase (HMM E-Value=6.4e-08) 35 0.058
SB_8014| Best HMM Match : HMG_box (HMM E-Value=0.00031) 33 0.13
SB_47073| Best HMM Match : CXCXC (HMM E-Value=3.1) 33 0.18
SB_49249| Best HMM Match : RRM_1 (HMM E-Value=0.00042) 31 0.54
SB_18806| Best HMM Match : RVT_1 (HMM E-Value=1.7e-14) 31 0.95
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18) 30 1.3
SB_7408| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_34899| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00019) 30 1.7
SB_40791| Best HMM Match : G2F (HMM E-Value=0.9) 29 2.2
SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 29 2.2
SB_30030| Best HMM Match : GATA-N (HMM E-Value=3.8) 29 2.9
SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4) 29 2.9
SB_8285| Best HMM Match : Filamin (HMM E-Value=1.1e-09) 29 2.9
SB_32823| Best HMM Match : Late_protein_L1 (HMM E-Value=2.5) 29 3.8
SB_22492| Best HMM Match : ANF_receptor (HMM E-Value=9.3e-05) 29 3.8
SB_9823| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_904| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08) 29 3.8
SB_43292| Best HMM Match : FYRN (HMM E-Value=6.3e-15) 28 5.1
SB_37311| Best HMM Match : Lysis_S (HMM E-Value=4.3) 28 5.1
SB_35214| Best HMM Match : FYRN (HMM E-Value=6.3e-15) 28 5.1
SB_19802| Best HMM Match : fn3 (HMM E-Value=0) 28 5.1
SB_48580| Best HMM Match : FYRN (HMM E-Value=6.3e-15) 28 5.1
SB_19101| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_5164| Best HMM Match : FYRN (HMM E-Value=6.3e-15) 28 5.1
SB_4563| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_49054| Best HMM Match : Chordopox_A30L (HMM E-Value=4.1) 28 6.7
SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28) 28 6.7
SB_17094| Best HMM Match : NapE (HMM E-Value=7.7) 28 6.7
SB_16504| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_4655| Best HMM Match : Spectrin (HMM E-Value=0) 28 6.7
SB_43495| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_40368| Best HMM Match : SASP_gamma (HMM E-Value=2.3) 28 6.7
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032) 28 6.7
SB_21439| Best HMM Match : LicD (HMM E-Value=4.5e-08) 28 6.7
SB_8479| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_53228| Best HMM Match : CITED (HMM E-Value=2.5) 27 8.8
SB_50054| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_36280| Best HMM Match : Dehydrin (HMM E-Value=4.4) 27 8.8
SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_27644| Best HMM Match : Ald_Xan_dh_C (HMM E-Value=3.1e-26) 27 8.8
SB_22720| Best HMM Match : KID (HMM E-Value=0.0014) 27 8.8
SB_15183| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29) 27 8.8
SB_29502| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_24887| Best HMM Match : PspA_IM30 (HMM E-Value=0.19) 27 8.8
SB_4648| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_74| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
>SB_2411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 660
Score = 79.0 bits (186), Expect = 3e-15
Identities = 36/77 (46%), Positives = 53/77 (68%)
Frame = +1
Query: 274 ELRKQQNNENLRRQFAEKANAVGPWIERQMDAVTAIGMGLQGSLEDQLRRLKEYEAGVYA 453
++ NE LR +FA KAN VGPWI++Q + + IG ++GSLE L+ L++ E + +
Sbjct: 389 QIESLSGNERLRVEFANKANVVGPWIQQQGEKLRTIGFHMEGSLEKNLQVLQDLETFITS 448
Query: 454 YKPHIEELERIHQAVQE 504
YKP+IEELE I+Q VQ+
Sbjct: 449 YKPNIEELEVINQEVQQ 465
Score = 58.0 bits (134), Expect = 5e-09
Identities = 25/49 (51%), Positives = 35/49 (71%)
Frame = +2
Query: 2 EDLVDMFIVHTIEEISGLMDAHARFKATLGEADKEYQAIVNLVHQVESI 148
EDL+DMF VHT+EEI L+DAH FK + A EY +I+++ Q+ES+
Sbjct: 345 EDLMDMFSVHTVEEIQELLDAHEAFKENMPAAQAEYNSIMDIAVQIESL 393
Score = 53.6 bits (123), Expect = 1e-07
Identities = 23/31 (74%), Positives = 28/31 (90%)
Frame = +3
Query: 510 IFENRYSQYTMEALRVGWEQLLTSINRTINE 602
IFEN +++YTMEA+RVGWEQLLT+I R INE
Sbjct: 468 IFENPHTKYTMEAMRVGWEQLLTAIARNINE 498
>SB_7706| Best HMM Match : Spectrin (HMM E-Value=0)
Length = 686
Score = 41.9 bits (94), Expect = 4e-04
Identities = 23/82 (28%), Positives = 46/82 (56%)
Frame = +2
Query: 2 EDLVDMFIVHTIEEISGLMDAHARFKATLGEADKEYQAIVNLVHQVESIVKQHQIPGGLE 181
EDL D +++EEI L +AHA+F+ +L +A+++ ++ L Q +K +++
Sbjct: 611 EDLTDPVRCNSVEEIRALQEAHAQFRLSLDQAEEDMYSLRKLDRQ----IKSYKVS---I 663
Query: 182 NPYTTLTAHELNRKXSDVRQLV 247
NPYT T L ++++++
Sbjct: 664 NPYTWFTMEALEDTWENLQKII 685
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/77 (22%), Positives = 33/77 (42%)
Frame = +1
Query: 274 ELRKQQNNENLRRQFAEKANAVGPWIERQMDAVTAIGMGLQGSLEDQLRRLKEYEAGVYA 453
E R + +QF+ A + WI +M V +L+ + ++ + +EA V A
Sbjct: 81 ERRSKLGESKTIQQFSRDAEDIEVWISEKMQTVLDESYKDPTNLQSKFQKHQAFEAEVEA 140
Query: 454 YKPHIEELERIHQAVQE 504
K + E + + + E
Sbjct: 141 NKERVLETVNLGEGLIE 157
>SB_10690| Best HMM Match : Pkinase (HMM E-Value=6.4e-08)
Length = 865
Score = 34.7 bits (76), Expect = 0.058
Identities = 26/90 (28%), Positives = 40/90 (44%)
Frame = +3
Query: 255 RRDAGRRASQATEQREPAKAVRRKGQRSRTLDREADGRRHRHRNGPAGLSGRPAAQT*RV 434
R GR + ++R+ R +R + DRE+ R HR R+ +P + + R
Sbjct: 116 RDGRGRSKERLRDRRDDRSDKGRWSERRSSKDRESRKREHRSRSKSRDKKPKPESPS-RG 174
Query: 435 RSWSVRLQATHRGTRTHPPGCPGRQIFENR 524
RS S R ++ RGT P GR + R
Sbjct: 175 RS-SRRSRSQERGTSNRSPSPRGRSHSDER 203
>SB_8014| Best HMM Match : HMG_box (HMM E-Value=0.00031)
Length = 406
Score = 33.5 bits (73), Expect = 0.13
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 7/94 (7%)
Frame = +2
Query: 266 WPQSFASNRTTRTCEGSSQKRPTQSDLGS-RGR------WTPSPPSEWACRALWKTSCAD 424
WP A N + GSS++R +D GR +PS S AC + S D
Sbjct: 221 WPPRRAQNTVSSARRGSSRQREVDNDEDQMEGRPNPFKVLSPSKRSMGACGKSFFQSVED 280
Query: 425 LKSTKLECTLTSHTSRNSNASTRLSRKADLRKQV 526
K T L T + S SN+ R S++ L+ +V
Sbjct: 281 EKKTAL-ATKAAKISPKSNSKARKSKQMTLQSKV 313
>SB_47073| Best HMM Match : CXCXC (HMM E-Value=3.1)
Length = 375
Score = 33.1 bits (72), Expect = 0.18
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +2
Query: 470 RNSNASTRLSRKADLRKQVFTIHNGGSSRRLGTAPDLDQPHH 595
RN+ S R +R+A L + T+ GG +RR T L PHH
Sbjct: 328 RNNRDSIRKAREATLIARAGTLEPGGLNRREKTVKLLSNPHH 369
>SB_49249| Best HMM Match : RRM_1 (HMM E-Value=0.00042)
Length = 792
Score = 31.5 bits (68), Expect = 0.54
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +3
Query: 258 RDAGRRASQATEQREPAKAVRRKGQRSRTLDREADGRRHRHRNGPAG 398
RD +A +RE A+ RR +R R +R + R R R+G G
Sbjct: 537 RDRELERDRADRERERARDTRRDRERERVRERPRERERERDRSGGDG 583
>SB_18806| Best HMM Match : RVT_1 (HMM E-Value=1.7e-14)
Length = 556
Score = 30.7 bits (66), Expect = 0.95
Identities = 15/45 (33%), Positives = 29/45 (64%)
Frame = +2
Query: 71 RFKATLGEADKEYQAIVNLVHQVESIVKQHQIPGGLENPYTTLTA 205
R + LGEAD+++ ++++V+ V+ ++Q Q+ G LE+ L A
Sbjct: 443 RERLILGEADRDHAEVMDVVNSVK--IQQQQVMGKLEHEQRQLEA 485
>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
Length = 765
Score = 30.3 bits (65), Expect = 1.3
Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Frame = +3
Query: 78 RQPSARLTKNTRLSSTWYIKSNLLSSSTRSPAVWRTHTPLSQLMS*TASXRT*--GSWCR 251
R S R +K R S + + + S +RSP R+ +P + S + S R S CR
Sbjct: 259 RSRSPRSSKRYRSSRSH--RKHRSHSRSRSPRSKRSRSPRKRRRSKSRSPRRYRDSSSCR 316
Query: 252 SRRDAGRRASQATEQREPAKAVRRKGQRSRTLDREADGRR 371
RR R S + R +++ R RSR+ R GRR
Sbjct: 317 RRRSRSRSRSPKSRLRSRSRSPYRIRYRSRS--RPPRGRR 354
Score = 27.5 bits (58), Expect = 8.8
Identities = 25/96 (26%), Positives = 41/96 (42%)
Frame = +3
Query: 75 SRQPSARLTKNTRLSSTWYIKSNLLSSSTRSPAVWRTHTPLSQLMS*TASXRT*GSWCRS 254
SR P R +R + S+ +RS R+ +P S+L S + S RS
Sbjct: 292 SRSPRKRRRSKSRSPRRYRDSSSCRRRRSRS----RSRSPKSRLRSRSRSPYRIRYRSRS 347
Query: 255 RRDAGRRASQATEQREPAKAVRRKGQRSRTLDREAD 362
R GRR+ +R +++ RR +S ++ D
Sbjct: 348 RPPRGRRSQSPRRRRTRSRSRRRCRSKSSSIASSPD 383
>SB_7408| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 249 RSRRDAGRRASQATEQREPAKAVRRKGQRSRTLDREADGRRHRHR 383
R R+ +R Q QR+ + +R+ QR R R+ +R RHR
Sbjct: 5 RQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRHR 49
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 249 RSRRDAGRRASQATEQREPAKAVRRKGQRSRTLDREADGRRHRHR 383
R R+ +R Q QR+ + +R+ QR R R+ +RHR R
Sbjct: 7 RQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRHRQR 51
>SB_34899| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00019)
Length = 1136
Score = 29.9 bits (64), Expect = 1.7
Identities = 21/76 (27%), Positives = 36/76 (47%)
Frame = +1
Query: 301 NLRRQFAEKANAVGPWIERQMDAVTAIGMGLQGSLEDQLRRLKEYEAGVYAYKPHIEELE 480
NL + N V ++E Q A+ I L+G + L RL + + ++K HI+ L+
Sbjct: 1011 NLSPELLAIRNVVQAFMEAQEVALDQIS-SLEGERQQTLSRLATMDEDLASHKAHIKSLK 1069
Query: 481 RIHQAVQEGRSSKTGI 528
R A + S+ G+
Sbjct: 1070 RELAAACRRQMSEDGM 1085
>SB_40791| Best HMM Match : G2F (HMM E-Value=0.9)
Length = 535
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +2
Query: 257 TRRWPQSFASNRTTRTCEGSSQKRPTQSDLGSRGRWTP 370
+RRWP+ AS R R C + +Q RW P
Sbjct: 379 SRRWPRGRASRRDARACAPKAYTHQSQKATLLGRRWRP 416
>SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
Length = 1021
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 258 RDAGRRASQATEQREPAKAVRRKGQRSRTLDREADGRRHRHRNGP 392
+ G R A + R+ + R G+R R + + DG R R+GP
Sbjct: 94 KQKGLRDFTADKPRDERRDSSRDGRRDRPFEEKLDGSRGGRRDGP 138
>SB_30030| Best HMM Match : GATA-N (HMM E-Value=3.8)
Length = 160
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Frame = +2
Query: 119 VNLVHQVESIVKQHQIP---GGLENPYTTLTAHELNRKXSDVRQLVPQPTRRWPQSFASN 289
+N H+ + V QH+ G P T + LN + ++ Q T+ + Q+
Sbjct: 37 LNTEHKCTNRVPQHRTQMYQQGTSTPNTNVPTGYLNTEHKCTNRVPKQRTQMYQQAHPPF 96
Query: 290 RTTRTCEGSSQKRPTQSDLGSRGRW 364
+ R E + RP+Q G W
Sbjct: 97 ASWRNSEEARTDRPSQQLRSLNGEW 121
>SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)
Length = 428
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +3
Query: 255 RRDAGRRASQATEQREPAKAVRRKGQRSRTLDREADGRRHRHRNGPAGLSGR 410
R +G R + + REP+ A + S R+ R+HRHR+ + LS R
Sbjct: 238 RSPSGGR-HEREDSREPSSA-EESSRTSSPHSRKKKSRKHRHRSRSSSLSSR 287
>SB_8285| Best HMM Match : Filamin (HMM E-Value=1.1e-09)
Length = 474
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -1
Query: 571 SCSQPTRRASIVYCEYLFSKICLPGQPGGCVRVPRC 464
+CS + I+ C + K CL Q GC++ P C
Sbjct: 21 ACSNVIKDPRILPCLHSICKTCLEKQLNGCLKCPVC 56
>SB_32823| Best HMM Match : Late_protein_L1 (HMM E-Value=2.5)
Length = 585
Score = 28.7 bits (61), Expect = 3.8
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Frame = +3
Query: 369 RHRH-RNGPAGLSGRPAAQT*----RVRSWSVRLQATHRGTRTHPPGCPG-RQIFENRYS 530
RHRH RN G + QT + L+ G+R HPPG PG R+++ N S
Sbjct: 498 RHRHHRNSHYGYQSSESIQTTFSAPPAPPTKLLLELGPPGSREHPPGHPGLRRLYNNSTS 557
>SB_22492| Best HMM Match : ANF_receptor (HMM E-Value=9.3e-05)
Length = 542
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/54 (37%), Positives = 24/54 (44%)
Frame = +3
Query: 270 RRASQATEQREPAKAVRRKGQRSRTLDREADGRRHRHRNGPAGLSGRPAAQT*R 431
RR + R ++VR K R R L R D +RH HR L P A T R
Sbjct: 458 RRDVKTPRGRATGQSVR-KDSRVRLLVRHHDHQRHLHRESCRPLDSIPDADTDR 510
>SB_9823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1329
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -1
Query: 169 GDLVLLDNRFDLMYQVDDSLVFFVSLAEGCLEASV 65
G ++ +R L+YQVDD + F S GCL A V
Sbjct: 876 GTSIMAGDRVALVYQVDDPIGFMTSF-YGCLLAGV 909
>SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 942
Score = 28.7 bits (61), Expect = 3.8
Identities = 27/105 (25%), Positives = 46/105 (43%)
Frame = +3
Query: 72 ASRQPSARLTKNTRLSSTWYIKSNLLSSSTRSPAVWRTHTPLSQLMS*TASXRT*GSWCR 251
+ +P +RL +++R S + L S RSP + ++ S + S S R
Sbjct: 277 SEERPKSRLYRHSRSKSK---ERKTLKSPIRSPRGQSSRERNTKRKSKSPSLERRRSRAR 333
Query: 252 SRRDAGRRASQATEQREPAKAVRRKGQRSRTLDREADGRRHRHRN 386
R RR + + R P ++ R +RS + +R RR R R+
Sbjct: 334 RSRSIERRDRRRSRSRSPRSSLGRSRRRSSSRNR----RRRRSRS 374
>SB_904| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)
Length = 510
Score = 28.7 bits (61), Expect = 3.8
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = +3
Query: 270 RRASQATEQREPAKAVRRKGQRSRTLDREADGRRHRHRNGPAGLSGRPAAQT*RVRSWS- 446
++ + A QRE +++ QR R L+RE G R + SG PA + S
Sbjct: 306 QKLAHAERQRELYLLYQKQQQRRRELEREEQGSEQRELD----TSGSPAHELVHKLSSKK 361
Query: 447 -VRLQATHRGTRTHPPGCPG 503
R+ H+ H PG G
Sbjct: 362 RKRVSGDHQKPSKHKPGNTG 381
>SB_43292| Best HMM Match : FYRN (HMM E-Value=6.3e-15)
Length = 645
Score = 28.3 bits (60), Expect = 5.1
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Frame = +3
Query: 87 SARLTKNTRLSSTWYIKSNLLSSSTRSPAVWRTHTPLSQLMS*TAS-----XRT*GSWCR 251
S LT ++ LSS I N+ + R PA++ THT + L S T S GS +
Sbjct: 339 SYALTNSSPLSSPRKILPNI-QQTVRFPALYNTHTGPNNLSSLTPSKAPQVLSKGGSARK 397
Query: 252 SRRDAGRRASQATEQREPAK 311
+ ++ + + QR+P K
Sbjct: 398 GKANSEQTSGHTQRQRKPRK 417
>SB_37311| Best HMM Match : Lysis_S (HMM E-Value=4.3)
Length = 231
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/49 (26%), Positives = 19/49 (38%)
Frame = +2
Query: 257 TRRWPQSFASNRTTRTCEGSSQKRPTQSDLGSRGRWTPSPPSEWACRAL 403
+RRWP+ AS R R C + + G P S W ++
Sbjct: 77 SRRWPRGRASRRDARACARADDASAGTASAGITHTPAPESNSAWTASSV 125
>SB_35214| Best HMM Match : FYRN (HMM E-Value=6.3e-15)
Length = 762
Score = 28.3 bits (60), Expect = 5.1
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Frame = +3
Query: 87 SARLTKNTRLSSTWYIKSNLLSSSTRSPAVWRTHTPLSQLMS*TAS-----XRT*GSWCR 251
S LT ++ LSS I N+ + R PA++ THT + L S T S GS +
Sbjct: 191 SYALTNSSPLSSPRKILPNI-QQTVRFPALYNTHTGPNNLSSLTPSKAPQVLSKGGSARK 249
Query: 252 SRRDAGRRASQATEQREPAK 311
+ ++ + + QR+P K
Sbjct: 250 GKANSEQTSGHTQRQRKPRK 269
>SB_19802| Best HMM Match : fn3 (HMM E-Value=0)
Length = 1075
Score = 28.3 bits (60), Expect = 5.1
Identities = 19/51 (37%), Positives = 24/51 (47%)
Frame = +3
Query: 33 PSKKSQVSWTLTLASRQPSARLTKNTRLSSTWYIKSNLLSSSTRSPAVWRT 185
PS S V +LT ASR RLT + +S Y S+ +SP RT
Sbjct: 41 PSSASIVDTSLTFASRPSVNRLTSDAIGNSNSYSSLTARKSAFKSPWTERT 91
>SB_48580| Best HMM Match : FYRN (HMM E-Value=6.3e-15)
Length = 847
Score = 28.3 bits (60), Expect = 5.1
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Frame = +3
Query: 87 SARLTKNTRLSSTWYIKSNLLSSSTRSPAVWRTHTPLSQLMS*TAS-----XRT*GSWCR 251
S LT ++ LSS I N+ + R PA++ THT + L S T S GS +
Sbjct: 339 SYALTNSSPLSSPRKILPNI-QQTVRFPALYNTHTGPNNLSSLTPSKAPQVLSKGGSARK 397
Query: 252 SRRDAGRRASQATEQREPAK 311
+ ++ + + QR+P K
Sbjct: 398 GKANSEQTSGHTQRQRKPRK 417
>SB_19101| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 134
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/48 (33%), Positives = 19/48 (39%)
Frame = +3
Query: 246 CRSRRDAGRRASQATEQREPAKAVRRKGQRSRTLDREADGRRHRHRNG 389
C + R A Q RE AK V Q + GRRH+H G
Sbjct: 37 CNRQITLDRHARQVKYGREGAKDVNAHVQLEKAHGHACRGRRHQHPEG 84
>SB_5164| Best HMM Match : FYRN (HMM E-Value=6.3e-15)
Length = 435
Score = 28.3 bits (60), Expect = 5.1
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Frame = +3
Query: 87 SARLTKNTRLSSTWYIKSNLLSSSTRSPAVWRTHTPLSQLMS*TAS-----XRT*GSWCR 251
S LT ++ LSS I N+ + R PA++ THT + L S T S GS +
Sbjct: 339 SYALTNSSPLSSPRKILPNI-QQTVRFPALYNTHTGPNNLSSLTPSKAPQVLSKGGSARK 397
Query: 252 SRRDAGRRASQATEQREPAK 311
+ ++ + + QR+P K
Sbjct: 398 GKANSEQTSGHTQRQRKPRK 417
>SB_4563| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1473
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -2
Query: 369 GVHLPLDPRSDCVGLFCELPSQVLVVLLLAKLCGQRRVGCGTS 241
G+ LP+D +D L +L S +++ L LCG + CG+S
Sbjct: 914 GMALPIDSMAD---LHNDLVSDYIIINELRALCGSLALRCGSS 953
>SB_49054| Best HMM Match : Chordopox_A30L (HMM E-Value=4.1)
Length = 432
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 249 RSRRDAGRRASQATEQREPAKAVRRKGQRSRTLDRE-ADGRRHRHRN 386
R R D G AS ++E + RR+G + R DRE D R + R+
Sbjct: 44 RRRDDRGEIASGSSEPDPRREKRRREGDKDRVKDRERGDKERTKDRD 90
>SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)
Length = 440
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +3
Query: 249 RSRRDAGRRA---SQATEQREPAKAVRRKGQRSRTLDREADGRRHRHRNGPAG 398
RSR +GR++ S R P K +R +RSRT + + R R R+ G
Sbjct: 183 RSRSPSGRKSRSRSPRKRSRSPRKMLRSPRKRSRTPRKRSRSPRKRSRSPRKG 235
>SB_17094| Best HMM Match : NapE (HMM E-Value=7.7)
Length = 219
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Frame = -2
Query: 546 PPLCIVNTCF---RRSAFLDSLVDAFEFLDVWLVSVHSSFV-LFKSAQLVFQ 403
PPLC + F ++ L L +F FL +W++ V S V LF +++Q
Sbjct: 122 PPLCPLRAMFCLPQKIKELTMLAKSFRFLAIWVILVASIAVGLFWGFHILYQ 173
>SB_16504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +3
Query: 249 RSRRDAGRRASQATEQR---EPAKAVRRKGQRSRTLDREADGRRHRHR 383
R RD RR + +R E + R +G+R R DR+ D R R R
Sbjct: 130 RGERDRDRRRERDRGERDRGERDRGERDRGERDRRRDRDRDRDRDRDR 177
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +3
Query: 249 RSRRDAGRRASQATEQREPAKAVRRKGQRSRTLDREADGRRHRHRN 386
R R + RR + ++ RR+ RSR DRE + R R R+
Sbjct: 156 RDRGERDRRRDRDRDRDRDRDRERRRRSRSREKDREGEKPRDRDRD 201
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +3
Query: 249 RSRRDAGRRASQATEQREPAKAVRRKGQRSRTLDREADGRRHRHRN 386
R RR R + E +P R + R R D+E D R HR+
Sbjct: 177 RERRRRSRSREKDREGEKPRDRDRDRRHRDRDRDKERDKDRDYHRD 222
>SB_4655| Best HMM Match : Spectrin (HMM E-Value=0)
Length = 934
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +1
Query: 274 ELRKQQNNENLRR-QFAEKANAVGPWIERQMDAVTAIGMGLQGSLEDQLRRLKEYEAGVY 450
+LR+++ + R QF A+ V WI ++ + +L+D+L++ + +EA +
Sbjct: 38 KLRRRRLEDAKRYFQFKRDADEVEDWINEKLQIASDESYRDPMNLQDKLQKHQAFEAEIS 97
Query: 451 AYKPHIEEL 477
A+ I EL
Sbjct: 98 AHSYAITEL 106
>SB_43495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1994
Score = 27.9 bits (59), Expect = 6.7
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 3/110 (2%)
Frame = +3
Query: 39 KKSQVSWTLTLASRQPSARLTKNTRLSSTWYIKSNLLSSSTRSPAVWRTHTPLSQLMS*T 218
K S + +LA QP L + S++ +K+ L+SS+ SPAV SQL++
Sbjct: 246 KTLTTSASTSLAVAQPHTSLATS---SNSQALKTETLNSSSASPAVSTASASSSQLVASN 302
Query: 219 ASXRT*GSWCRSRRDAGR---RASQATEQREPAKAVRRKGQRSRTLDREA 359
+S + S S S + + + V GQ S +L E+
Sbjct: 303 SSSSSQASPATSTNQTSATFISLSTSITDQTSSSLVAESGQTSSSLVAES 352
>SB_40368| Best HMM Match : SASP_gamma (HMM E-Value=2.3)
Length = 325
Score = 27.9 bits (59), Expect = 6.7
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Frame = +3
Query: 261 DAGRRASQATEQREPAKAVRRKGQRSRTLDREADGRRHRHRNGPAGLSGRPAAQT*RV-- 434
D S+ + PAK + +RSR E + +H GPA RP+ +T V
Sbjct: 5 DINNAGSKKNDPTSPAKKPPPR-RRSRETPPETPPVQLKHLAGPAEKPHRPSRETPPVQP 63
Query: 435 -RSWSVRLQATHRGTRTHPPGCP 500
R+ + + HR ++ PP P
Sbjct: 64 RRNPTCPAEKHHRSSKETPPVQP 86
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 318 RRKGQRSRTLDREADGRRHRHRN 386
RR+ RSR+ DR D R RHR+
Sbjct: 437 RRRRDRSRSRDRSRDRDRRRHRD 459
Score = 27.9 bits (59), Expect = 6.7
Identities = 19/50 (38%), Positives = 23/50 (46%)
Frame = +1
Query: 37 RRNLRSHGRSRSLQGNPRRG*QRIPGYRQPGTSSRIYCQAAPDPRRFGEP 186
RR RS R RS + RR R R+ G Y + +P PRR G P
Sbjct: 438 RRRDRSRSRDRSRDRDRRRHRDRS---RERGGGRDRYRERSPSPRRAGAP 484
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 318 RRKGQRSRTLDREADGRRHRHRNGPAG 398
RR RSR R+ D RRHR R+ G
Sbjct: 439 RRDRSRSRDRSRDRDRRRHRDRSRERG 465
>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
Length = 2565
Score = 27.9 bits (59), Expect = 6.7
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Frame = +3
Query: 249 RSRRDAGRRASQATEQREPAKAVRRKGQRSRTLDREADGRRHRHR----NGPAGLSGR 410
R RR RR + +R + RR+ R+R R+ RR R+R P+GL R
Sbjct: 695 RQRRSRRRRRRRRRRRRSQLRRKRRRKVRARRRKRQRILRRRRYRLLYKKRPSGLQVR 752
>SB_21439| Best HMM Match : LicD (HMM E-Value=4.5e-08)
Length = 362
Score = 27.9 bits (59), Expect = 6.7
Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 1/95 (1%)
Frame = +2
Query: 170 GGLENPYTTLTAHELNRKXSDVRQLVPQPTRRWPQSFASNRTTRTCEGSSQKRPTQSDL- 346
G L+ P L + R D L+P+ + + + + T E D+
Sbjct: 71 GALKTPTRFLVSQGRPRTQHDTDLLLPESVQAENTNMSRTFCSMTYEHGPMCPSLYIDIE 130
Query: 347 GSRGRWTPSPPSEWACRALWKTSCADLKSTKLECT 451
GS W + + W C + + DL+ +L T
Sbjct: 131 GSTCEWRNASQTAWNCSDIRTAAATDLRQAQLAMT 165
>SB_8479| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/66 (27%), Positives = 28/66 (42%)
Frame = +2
Query: 329 PTQSDLGSRGRWTPSPPSEWACRALWKTSCADLKSTKLECTLTSHTSRNSNASTRLSRKA 508
PT + G T +PP+ + RA + S T +C T+ SR N T+ K
Sbjct: 345 PTSTPRSRTGSRTRTPPTPTSSRASSRGSARGGAKTTKKC--TTRKSREQNGDTKTKTKC 402
Query: 509 DLRKQV 526
++V
Sbjct: 403 ATTRRV 408
>SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3213
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/68 (19%), Positives = 31/68 (45%)
Frame = +1
Query: 313 QFAEKANAVGPWIERQMDAVTAIGMGLQGSLEDQLRRLKEYEAGVYAYKPHIEELERIHQ 492
QF A + W+ ++ +L+ +L++ + +EA V A+K ++ + + Q
Sbjct: 1797 QFLRDAKELESWMNEKLQIAAEASYREATNLQQKLQKHQTFEAEVSAHKSELDAITQTGQ 1856
Query: 493 AVQEGRSS 516
++ S
Sbjct: 1857 SLMRNSPS 1864
>SB_53228| Best HMM Match : CITED (HMM E-Value=2.5)
Length = 417
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -2
Query: 369 GVHLPLDPRSDCVGLFCELPSQVLVVLLLAKLCGQRRVGCGTS 241
G+ LP+D +D L +L S +++ L LCG + CG S
Sbjct: 51 GMALPIDSMAD---LHNDLVSDYIIINELRALCGSLALRCGRS 90
>SB_50054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 937
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +3
Query: 249 RSRRDAGRRASQATEQREPAKAVRRKGQRSRTLDREADGRRHRHR 383
R+ R R+ + T++R R GQ DR DGR RHR
Sbjct: 483 RTDRRTDRQTDRQTDRRTDG---RTYGQTYGQTDRRTDGRTDRHR 524
>SB_36280| Best HMM Match : Dehydrin (HMM E-Value=4.4)
Length = 426
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +3
Query: 252 SRRDAGRRASQATEQREPAKAVRRKGQRSRTLDREADGRRHRH 380
SRR + R++ A ++R+ ++ R+ + R DR+ D R R+
Sbjct: 89 SRRSSDDRSTDARDRRDRRRSSSRERRPPRDRDRDRDRDRDRY 131
>SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6119
Score = 27.5 bits (58), Expect = 8.8
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Frame = +2
Query: 341 DLGSRGRWTPSPPSEWAC--RALWKTSCADLKS--TKLECTLTSHTSRNSNASTRLSR-K 505
+L R R P P EW R LWK+S + KS K T++ +S ++R K
Sbjct: 1587 ELTVRVRGKPQPELEWFKYDRTLWKSSRINFKSRDNKFTMTVSDLGLDDSGMYQCVARNK 1646
Query: 506 ADLRKQVFTIHNGGSSRRLGTAPDL 580
A + F + + + +G APD+
Sbjct: 1647 AGSSSRTFNL-DVQKKKVIGNAPDI 1670
>SB_27644| Best HMM Match : Ald_Xan_dh_C (HMM E-Value=3.1e-26)
Length = 274
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -1
Query: 256 RLRHQLPHVRXLAVQLMSCES--GVWVLQTAGDLVLLDNRFDLM 131
R+ PH + L+V + GV+ +A DL +DN F L+
Sbjct: 38 RVLSDRPHAKILSVDASKAVAVHGVYAFYSAADLASVDNNFGLL 81
>SB_22720| Best HMM Match : KID (HMM E-Value=0.0014)
Length = 847
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 421 RLKEYEAGVYAYKPHIEELERIHQAVQE 504
+L E E GV + +EE +++HQA+Q+
Sbjct: 323 KLAELEHGVEELECAVEESQKLHQAIQQ 350
>SB_15183| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1488
Score = 27.5 bits (58), Expect = 8.8
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 4/101 (3%)
Frame = +2
Query: 176 LENPYT-TLTAHELNRKXSDV--RQLVPQPTRRWPQSFASNR-TTRTCEGSSQKRPTQSD 343
L +P T TL++H L+R + + +P R S +R TR + R
Sbjct: 948 LSHPVTRTLSSHILSRPVTRTLSSHTLSRPVTRTLSSHTLSRPVTRVISSHTLSRHVTCT 1007
Query: 344 LGSRGRWTPSPPSEWACRALWKTSCADLKSTKLECTLTSHT 466
L T + S R + +T + S + CTL+SHT
Sbjct: 1008 LFQSHPVTRTLSSHTLSRPVTRTLSSHTLSRHVTCTLSSHT 1048
>SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29)
Length = 1851
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -2
Query: 369 GVHLPLDPRSDCVGLFCELPSQVLVVLLLAKLCGQRRVGCGTS 241
G+ LP+D +D L +L S +++ L LCG + CG S
Sbjct: 1380 GMALPIDSMAD---LHNDLVSDYIIINELRALCGSLALRCGRS 1419
>SB_29502| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +3
Query: 252 SRRDAGRRASQATEQREPAKAVRRKGQRSRTLDREADGRRHRH 380
SRR + R++ A ++R+ ++ R+ + R DR+ D R R+
Sbjct: 89 SRRSSDDRSTDARDRRDRRRSSSRERRPPRDRDRDRDRDRDRY 131
>SB_24887| Best HMM Match : PspA_IM30 (HMM E-Value=0.19)
Length = 320
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 421 RLKEYEAGVYAYKPHIEELERIHQAVQE 504
+L E E GV + +EE +++HQA+Q+
Sbjct: 282 KLAELEHGVEELECAVEESQKLHQAIQQ 309
>SB_4648| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 594
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 185 PYTTLTAHELNRKXSDVRQLVPQPTRRWP 271
PY+ T LN K SD+R ++ Q R WP
Sbjct: 429 PYSN-TFDVLNMKGSDLRGVLEQSVRTWP 456
>SB_74| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 711
Score = 27.5 bits (58), Expect = 8.8
Identities = 18/73 (24%), Positives = 29/73 (39%)
Frame = -2
Query: 570 AVPSRREEPPLCIVNTCFRRSAFLDSLVDAFEFLDVWLVSVHSSFVLFKSAQLVFQRALQ 391
+V +P C C R+ ++ EFL V+ H L K +++ LQ
Sbjct: 6 SVALSNSKPIFC--TNCEDRNTASSRCIECMEFLCEQCVAAHKRTKLTKEHEILALNELQ 63
Query: 390 AHSDGGDGVHLPL 352
+ D +H PL
Sbjct: 64 GQPEVQDKLHRPL 76
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,526,974
Number of Sequences: 59808
Number of extensions: 500547
Number of successful extensions: 2222
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 1917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2203
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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