Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0287.Seq
         (604 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.7  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   5.3  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   9.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.3  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
 Frame = +2

Query: 458  SHTSRNSNASTRLSRKADLRKQVFTIHNGGSS-----RRLGTAPDLDQPHHQR 601
            S        STR S K D   +   +HNGG       + L +AP   Q   Q+
Sbjct: 1404 SRAGSRDEDSTRDSTKLDRSSREREVHNGGQQEDRDRKTLTSAPQQPQQQQQQ 1456


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 223 LAVQLMSCESGVWVLQTAGDLVLLD 149
           L  +L  CES + V+  + DLV  D
Sbjct: 175 LRSELAQCESNIKVISISPDLVETD 199


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 430 EYEAGVYAYKPHIEE 474
           EY+  +  YKP +EE
Sbjct: 171 EYKPEIMEYKPDVEE 185


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 313 AFAGSRCSVACEA 275
           +F  SRCSV C A
Sbjct: 13  SFRESRCSVRCSA 25


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,737
Number of Sequences: 438
Number of extensions: 4128
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)