Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0287.Seq
(604 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g57370.1 68418.m07168 expressed protein low similarity to nuc... 33 0.15
At5g01270.1 68418.m00036 double-stranded RNA-binding domain (DsR... 32 0.25
At3g17170.1 68416.m02190 ribosomal protein S6 family protein (RF... 32 0.34
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 31 0.44
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 31 0.44
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 31 0.44
At4g21270.1 68417.m03074 kinesin-like protein A (KATA) 31 0.78
At3g45140.1 68416.m04872 lipoxygenase (LOX2) identical to SP|P38418 31 0.78
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 30 1.4
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 30 1.4
At3g03340.1 68416.m00332 LUC7 N_terminus domain-containing prote... 29 1.8
At1g78120.1 68414.m09104 tetratricopeptide repeat (TPR)-containi... 29 2.4
At5g54050.1 68418.m06722 DC1 domain-containing protein 28 4.1
At4g02030.1 68417.m00273 expressed protein 28 4.1
At3g56400.1 68416.m06272 WRKY family transcription factor DNA-bi... 28 5.5
At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1) ide... 28 5.5
At3g19990.1 68416.m02529 expressed protein 28 5.5
At3g01060.3 68416.m00009 expressed protein 28 5.5
At3g01060.2 68416.m00007 expressed protein 28 5.5
At3g01060.1 68416.m00008 expressed protein 28 5.5
At5g40740.1 68418.m04944 expressed protein 27 7.2
At5g35840.1 68418.m04306 phytochrome C (PHYC) identical to SP|P1... 27 7.2
At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing ... 27 7.2
At4g39630.1 68417.m05601 expressed protein 27 7.2
At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi... 27 7.2
At1g11925.1 68414.m01377 stigma-specific Stig1 family protein co... 27 7.2
At5g25590.1 68418.m03045 expressed protein contains Pfam profile... 27 9.6
At5g19300.1 68418.m02300 expressed protein contains Pfam profile... 27 9.6
At4g31820.1 68417.m04522 phototropic-responsive NPH3 family prot... 27 9.6
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 27 9.6
At3g19050.1 68416.m02420 kinesin motor protein-related contains ... 27 9.6
At1g75010.1 68414.m08709 MORN (Membrane Occupation and Recogniti... 27 9.6
At1g53470.1 68414.m06061 mechanosensitive ion channel domain-con... 27 9.6
At1g27650.1 68414.m03379 U2 snRNP auxiliary factor small subunit... 27 9.6
At1g01320.1 68414.m00048 tetratricopeptide repeat (TPR)-containi... 27 9.6
>At5g57370.1 68418.m07168 expressed protein low similarity to
nucleic acid binding protein [Homo sapiens] GI:431953
Length = 219
Score = 33.1 bits (72), Expect = 0.15
Identities = 20/53 (37%), Positives = 28/53 (52%)
Frame = +3
Query: 252 SRRDAGRRASQATEQREPAKAVRRKGQRSRTLDREADGRRHRHRNGPAGLSGR 410
S RD RR + + REP + RR+G+ R DR+ D R R R+ GL +
Sbjct: 2 SERD--RRERERDKDREPDRD-RRRGRDDRDRDRDRDRERDRERDRDRGLRNK 51
>At5g01270.1 68418.m00036 double-stranded RNA-binding domain
(DsRBD)-containing protein contains Pfam profile
PF00035: Double-stranded RNA binding motif
Length = 771
Score = 32.3 bits (70), Expect = 0.25
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +1
Query: 301 NLRRQFAEKANAVGPWIERQMDAVTAIGMG--LQGSLEDQLRRLKEYEAGVYAY 456
N + F ++ A+ WI R+MD V GM L+ ++D++ LK+Y YA+
Sbjct: 153 NTMKSFEDRIEALKSWISREMDPVRINGMSAELKRYMDDRM-LLKQYIDNDYAF 205
>At3g17170.1 68416.m02190 ribosomal protein S6 family protein (RFC3)
annotation temporarily based on supporting cDNA
gi|15620809|dbj|AB057424.1|; contains TIGRfam TIGR00166
and Pfam PF01250 profiles ribosomal protein S6.
Length = 314
Score = 31.9 bits (69), Expect = 0.34
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +1
Query: 379 IGMGLQGSLEDQLRRLKEYEAGVYAYKPHIEELERIHQAVQEGRSSKTG 525
+ + LQ L ++ R++ YE ++ H EE+E I+Q VQ+ K G
Sbjct: 107 LDLQLQSDLNEE--RMRHYEVVYLIHEKHAEEVESINQKVQDYLKEKKG 153
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 31.5 bits (68), Expect = 0.44
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +3
Query: 249 RSRRDAGRRASQATEQREPAKAVRRKGQRSRTLDREADGRRHR-HRNGPAGLSGRPAAQT 425
RSRR R +++RE K++ + + T DR+ D RRH+ + P
Sbjct: 124 RSRRSRSRSERHRSQERE--KSLEIEPKERETKDRDRDRRRHKDKKEDKVEPEADPERDQ 181
Query: 426 *RVRSWSVRLQATHR 470
V ++ + L+AT R
Sbjct: 182 RTVFAYQIALRATER 196
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 31.5 bits (68), Expect = 0.44
Identities = 29/72 (40%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +1
Query: 1 RRSRGYVHRSYHRRNLRSH----GRSRSLQGNPRRG*QRIPGYRQPGTSSRIYCQAAPDP 168
RR R RS RR RS GRSRS +PR+G R P R+ +SS ++P P
Sbjct: 312 RRLRSPPRRSPIRRRSRSPIRRPGRSRSSSISPRKG--RGPAGRRGRSSS---YSSSPSP 366
Query: 169 RRFGEPIHHSHS 204
RR I S S
Sbjct: 367 RRIPRKISRSRS 378
Score = 27.1 bits (57), Expect = 9.6
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +1
Query: 28 SYHRRNLRSHGRSRSLQGNPRRG*QRIPGYRQPGTSSRIYCQAAPDPRRFGEP 186
S RR+ S R R G+P R P R+P + SR ++P PRR+ P
Sbjct: 233 SPRRRSPDSPHRRRP--GSPIRRRGDTPPRRRPASPSRGRSPSSPPPRRYRSP 283
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 31.5 bits (68), Expect = 0.44
Identities = 29/72 (40%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +1
Query: 1 RRSRGYVHRSYHRRNLRSH----GRSRSLQGNPRRG*QRIPGYRQPGTSSRIYCQAAPDP 168
RR R RS RR RS GRSRS +PR+G R P R+ +SS ++P P
Sbjct: 319 RRLRSPPRRSPIRRRSRSPIRRPGRSRSSSISPRKG--RGPAGRRGRSSS---YSSSPSP 373
Query: 169 RRFGEPIHHSHS 204
RR I S S
Sbjct: 374 RRIPRKISRSRS 385
Score = 27.1 bits (57), Expect = 9.6
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +1
Query: 28 SYHRRNLRSHGRSRSLQGNPRRG*QRIPGYRQPGTSSRIYCQAAPDPRRFGEP 186
S RR+ S R R G+P R P R+P + SR ++P PRR+ P
Sbjct: 240 SPRRRSPDSPHRRRP--GSPIRRRGDTPPRRRPASPSRGRSPSSPPPRRYRSP 290
>At4g21270.1 68417.m03074 kinesin-like protein A (KATA)
Length = 793
Score = 30.7 bits (66), Expect = 0.78
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Frame = +1
Query: 298 ENLRRQFAEKANA-VGPWIERQMDAVTAIGMGLQGSLEDQLRRLKEYEAGVYAYKPHIE- 471
E R AEK A +G +++ + A + SLED +RL+EY + Y ++
Sbjct: 183 EKEARVAAEKVQASLGEELDKVKEEKMAAKQKVT-SLEDMYKRLQEYNTSLQQYNSKLQT 241
Query: 472 ELERIHQAVQEGRSSKTGI 528
+LE + A+ K+ I
Sbjct: 242 DLETVRAALTRAEKEKSSI 260
>At3g45140.1 68416.m04872 lipoxygenase (LOX2) identical to SP|P38418
Length = 896
Score = 30.7 bits (66), Expect = 0.78
Identities = 23/71 (32%), Positives = 32/71 (45%)
Frame = -2
Query: 555 REEPPLCIVNTCFRRSAFLDSLVDAFEFLDVWLVSVHSSFVLFKSAQLVFQRALQAHSDG 376
R+E T F A L +L F ++ L+S F FK+ Q +F+ +Q D
Sbjct: 299 RDEEFSTAKGTSFTGKAVLAALPSIFPQIESVLLSPQEPFPHFKAIQNLFEEGIQLPKDA 358
Query: 375 GDGVHLPLDPR 343
G LPL PR
Sbjct: 359 G---LLPLLPR 366
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +2
Query: 215 NRKXSDVRQLVPQPTRRWPQSFASNRTTRTCEGSSQKRPTQSDLGSRGRWTPSPPS 382
N S R L P RR P+S + +T+ E S KR + R +P P+
Sbjct: 203 NESRSHSRSLSASPARRSPRSSSPQKTSPAREVSPDKRSNERSPSPRRSLSPRSPA 258
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +2
Query: 215 NRKXSDVRQLVPQPTRRWPQSFASNRTTRTCEGSSQKRPTQSDLGSRGRWTPSPPS 382
N S R L P RR P+S + +T+ E S KR + R +P P+
Sbjct: 203 NESRSHSRSLSASPARRSPRSSSPQKTSPAREVSPDKRSNERSPSPRRSLSPRSPA 258
>At3g03340.1 68416.m00332 LUC7 N_terminus domain-containing protein
contains Pfam domain PF03194: LUC7 N_terminus
Length = 402
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Frame = +3
Query: 249 RSRRDAGRRASQATEQ-----REPAKAVRRKGQRSRTLDREADGRRHRHRN 386
R RD R + EQ R +++ RR RSR+ DR D RHR N
Sbjct: 350 RRSRDRDRHHDRDREQDRDYDRSHSRSRRRSRSRSRSRDRPRDYDRHRRHN 400
>At1g78120.1 68414.m09104 tetratricopeptide repeat (TPR)-containing
protein low similarity to SP|Q99615 DnaJ homolog
subfamily C member 7 (Tetratricopeptide repeat protein
2) {Homo sapiens}; contains Pfam profile PF00515: TPR
Domain
Length = 530
Score = 29.1 bits (62), Expect = 2.4
Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Frame = +1
Query: 322 EKANAVGPWIERQMDAVTAIGMGLQGSLEDQLRRLKEYEAGVYAYKPHIEELERIHQAVQ 501
E+A + P ER + ++ + L G +E L E AG Y HIE++E + + ++
Sbjct: 217 EEALRLNPTYERAHQRLASLQLRL-GEVEKALCHYNE--AGKYTETKHIEQVEDVVKCLR 273
Query: 502 ---EGRSSKTGIHNTQWRLFA-SAGNSS*PRSTAPST 600
E R SK + LFA S G S PR A T
Sbjct: 274 RCDEARRSKEWNVALKETLFAISYGADSSPRVYALQT 310
>At5g54050.1 68418.m06722 DC1 domain-containing protein
Length = 580
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +1
Query: 133 SSRIYCQAAPDPRRFGEPIHHSHS 204
S I C A P P EP HH HS
Sbjct: 142 SLHIGCVAEPPPLTISEPKHHKHS 165
>At4g02030.1 68417.m00273 expressed protein
Length = 694
Score = 28.3 bits (60), Expect = 4.1
Identities = 25/86 (29%), Positives = 39/86 (45%)
Frame = +2
Query: 188 YTTLTAHELNRKXSDVRQLVPQPTRRWPQSFASNRTTRTCEGSSQKRPTQSDLGSRGRWT 367
Y + HEL +V+Q++PQ T R + SN + T SS+ +D +R
Sbjct: 508 YVDMFLHELEEVGKEVKQVLPQGTFRKHKRTDSNGSNTTT--SSRSNTLHNDKMARSN-- 563
Query: 368 PSPPSEWACRALWKTSCADLKSTKLE 445
S+ A L++T A L K+E
Sbjct: 564 ----SQRARSQLFETHLAKLFKQKVE 585
>At3g56400.1 68416.m06272 WRKY family transcription factor
DNA-binding protein 4 WRKY4 - Nicotiana tabacum,
EMBL:AF193771
Length = 294
Score = 27.9 bits (59), Expect = 5.5
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = +2
Query: 392 CRALWKTSCADLKSTKLECTLTSHTSRNSNASTRLSRKADLRKQVFTIHNGGSSRRLGTA 571
C+A + +L+ T + + N+NA T S+ D ++F S L T+
Sbjct: 153 CKATKQVQKVELEPKMFSITYIGNHTCNTNAETPKSKTCDHHDEIFMDSEDHKSPSLSTS 212
Query: 572 -PDLDQPH 592
+ D PH
Sbjct: 213 MKEEDNPH 220
>At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1)
identical to RNA-dependent RNA polymerase [Arabidopsis
thaliana] gi|8248473|gb|AAF74208
Length = 1196
Score = 27.9 bits (59), Expect = 5.5
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = +2
Query: 179 ENPYTTLTAHELNRKXSDVRQLVPQPTRRW---PQSFASNRTTRTCEGSSQK 325
+NP L +HE + S++R+LV PTR + P+ SNR R + +++
Sbjct: 394 KNP-KLLGSHEQSEDISEIRRLVITPTRAYCLPPEVELSNRVLRRYKAVAER 444
>At3g19990.1 68416.m02529 expressed protein
Length = 425
Score = 27.9 bits (59), Expect = 5.5
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Frame = -2
Query: 516 RRSAFLDSLVDAFEFLDVWLVSVHSSFV-LFKSA--QLVFQRALQAHSDGGDGVHLPL-D 349
+ +FLD L+D ++ L +W LF SA A+ S G D V + +
Sbjct: 50 KHGSFLDHLIDIYKILKLWKAPESVCLCGLFHSAYSNSYVNLAIFDPSTGRDVVRDHVGE 109
Query: 348 PRSDCVGLFCELPSQVLV 295
+ LFC +P Q L+
Sbjct: 110 AAESLIHLFCVVPRQTLI 127
>At3g01060.3 68416.m00009 expressed protein
Length = 372
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 378 GGDGVHLPLDPRSDCVGLFCELPSQVLVVLL 286
GG VH P+ P +CV L EL + V ++L
Sbjct: 132 GGLWVHAPIAPTKECVQLIKELGAPVEYIVL 162
>At3g01060.2 68416.m00007 expressed protein
Length = 442
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 378 GGDGVHLPLDPRSDCVGLFCELPSQVLVVLL 286
GG VH P+ P +CV L EL + V ++L
Sbjct: 127 GGLWVHAPIAPTKECVQLIKELGAPVEYIVL 157
>At3g01060.1 68416.m00008 expressed protein
Length = 455
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 378 GGDGVHLPLDPRSDCVGLFCELPSQVLVVLL 286
GG VH P+ P +CV L EL + V ++L
Sbjct: 132 GGLWVHAPIAPTKECVQLIKELGAPVEYIVL 162
>At5g40740.1 68418.m04944 expressed protein
Length = 741
Score = 27.5 bits (58), Expect = 7.2
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = +2
Query: 161 QIPGGLENPYTTLTAHELNRKXSDVRQLVPQPTRRWPQSFASNRTTRTCEGSSQKRPTQS 340
+I G+ N LT+ N + V PT + PQ F+S T+ G+ QKR T +
Sbjct: 488 RIMEGVSNDVAELTSTMSNVQLEKVSA---SPTLKLPQLFSSTPTSSGKGGNGQKRQTMA 544
>At5g35840.1 68418.m04306 phytochrome C (PHYC) identical to
SP|P14714 Phytochrome C {Arabidopsis thaliana}
Length = 1111
Score = 27.5 bits (58), Expect = 7.2
Identities = 8/24 (33%), Positives = 19/24 (79%)
Frame = +1
Query: 343 PWIERQMDAVTAIGMGLQGSLEDQ 414
PW + +MDA+ ++ + ++GSL+++
Sbjct: 557 PWDDMEMDAINSLQLIIKGSLQEE 580
>At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing
protein KIAA0332 gene, Homo sapiens, EMBL:HSAB2330
Length = 947
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +3
Query: 258 RDAGRRASQATEQREPAKAVRRKGQRSRTLDREADGRRHRHRN 386
RD+ R+ +++ Q ++ R R D + D RHR R+
Sbjct: 865 RDSSRKRNRSESQNRSQSPPQKSLTRERVRDHDLDKDRHRDRD 907
>At4g39630.1 68417.m05601 expressed protein
Length = 233
Score = 27.5 bits (58), Expect = 7.2
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Frame = +1
Query: 274 ELRKQQNNENLRRQFAEKA-NAVGPWIERQMDAVTAIGMGLQGSLEDQLRRLKEYEAGVY 450
+L ++ N+ R + EK + V +ERQ+ A+ AI + LR L+ Y
Sbjct: 11 KLTEEDRNDEKRIRIEEKKEDFVDEEVERQIAAIRAIRDVEIEQMLTALRLLRSYFTEEQ 70
Query: 451 AYKPHIEELERIHQAVQEGRSSKTGIHNTQWR 546
+ P ++ + + R+ +TG +WR
Sbjct: 71 LHTPVLDFFKENLPDLSISRNEETGEIELKWR 102
>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
like protein A, Arabidopsis thaliana, gb:Q07970
Length = 790
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 400 SLEDQLRRLKEYEAGVYAYKPHIE-ELERIHQAVQEGRSSKTGI 528
SLED +RL+EY + Y ++ +LE +A K+ I
Sbjct: 214 SLEDMYKRLQEYNTSLQQYNTKLQTDLEVAREAHTRAEKEKSSI 257
>At1g11925.1 68414.m01377 stigma-specific Stig1 family protein
contains Pfam profile PF04885: Stigma-specific protein,
Stig1
Length = 121
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +2
Query: 407 KTSCADLKSTKLECTLTSHTSRNSNASTRLSRKAD 511
+ C DL++ KL C + + S + R +RK D
Sbjct: 68 RKKCVDLRTNKLNCGRCGKSCQYSEVALRSARKGD 102
>At5g25590.1 68418.m03045 expressed protein contains Pfam profile
PF04783: Protein of unknown function (DUF630)
Length = 775
Score = 27.1 bits (57), Expect = 9.6
Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 2/75 (2%)
Frame = +1
Query: 274 ELRKQQNNENLRRQFAEKANAVGPWIER--QMDAVTAIGMGLQGSLEDQLRRLKEYEAGV 447
E++ ++ E RR+F K W ++ Q T G + + E V
Sbjct: 645 EMKLKEKCEETRREFIRKKQGFEDWYQKHLQKRGPTEEAEGGDDATTSSRDHVTERRIAV 704
Query: 448 YAYKPHIEELERIHQ 492
K +EE E HQ
Sbjct: 705 ETLKKRLEEEEEAHQ 719
>At5g19300.1 68418.m02300 expressed protein contains Pfam profile
PF02598: Uncharacterized ACR, COG2106
Length = 398
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +2
Query: 512 LRKQVFTIHNGGSSRRLGTAPDLDQPHHQR 601
LRK +F N R +G P LD PHH R
Sbjct: 179 LRKSLFPKQN--DLRYVGMLPPLDAPHHLR 206
>At4g31820.1 68417.m04522 phototropic-responsive NPH3 family protein
contains NPH3 family domain, Pfam:PF03000
Length = 571
Score = 27.1 bits (57), Expect = 9.6
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Frame = +2
Query: 239 QLVPQPTRR-----WP-QSFASNRTTRTCEGSSQKRPTQSDLGSRGR 361
QL+P +RR WP + SN+++ GSSQ P +S S R
Sbjct: 519 QLMPSRSRRIFEKIWPGKGEISNKSSEVSSGSSQSPPAKSSSSSSRR 565
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 27.1 bits (57), Expect = 9.6
Identities = 20/46 (43%), Positives = 24/46 (52%)
Frame = +1
Query: 49 RSHGRSRSLQGNPRRG*QRIPGYRQPGTSSRIYCQAAPDPRRFGEP 186
RSHGRSRS + R +R P + SR Y +P PRR G P
Sbjct: 150 RSHGRSRSRSISRSRSPRR-PSDSRSRYRSRSY---SPAPRRRGGP 191
>At3g19050.1 68416.m02420 kinesin motor protein-related contains Pfam
profile: PF00225 Kinesin motor domain; contains
non-consensus splice site (GC) at intron 12
Length = 2722
Score = 27.1 bits (57), Expect = 9.6
Identities = 22/91 (24%), Positives = 40/91 (43%)
Frame = +1
Query: 289 QNNENLRRQFAEKANAVGPWIERQMDAVTAIGMGLQGSLEDQLRRLKEYEAGVYAYKPHI 468
+N N+ + AE+ +E ++ + + + E+ R L E + K HI
Sbjct: 2269 ENKVNVVKDEAERQRLQREELEMELHTIRQQMESARNADEEMKRILDEKHMDLAQAKKHI 2328
Query: 469 EELERIHQAVQEGRSSKTGIHNTQWRLFASA 561
E LER + A Q+ ++ H ++ L A A
Sbjct: 2329 EALER-NTADQKTEITQLSEHISELNLHAEA 2358
>At1g75010.1 68414.m08709 MORN (Membrane Occupation and Recognition
Nexus) repeat-containing protein
/phosphatidylinositol-4-phosphate 5-kinase-related low
similarity to phosphatidylinositol-4-phosphate 5-kinase
AtPIP5K1 [Arabidopsis thaliana] GI:3702691; contains
Pfam profile PF02493: MORN repeat
Length = 712
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 473 NSNASTRLSRKADLRKQVFTIHNGGSSRRLGTAPDL 580
N + +++LSRKAD R++ F NG + TA L
Sbjct: 482 NLSVASQLSRKADSREESFFNPNGSTKDSSDTASTL 517
>At1g53470.1 68414.m06061 mechanosensitive ion channel
domain-containing protein / MS ion channel
domain-containing protein contains Pfam profile PF00924:
Mechanosensitive ion channel
Length = 881
Score = 27.1 bits (57), Expect = 9.6
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = +3
Query: 9 SWICSSFIPSKKSQVSWTLTLASRQPSARLTKNTRLSSTWYIKSNLLSSSTRSPAVWR 182
S ICS IP + + W L L + + RL S+W +K L S +WR
Sbjct: 272 SLICSLVIPYLRGKTLWDLALWKWEVMVLVLICGRLVSSWIVK--LFVYFVESNFLWR 327
>At1g27650.1 68414.m03379 U2 snRNP auxiliary factor small subunit,
putative Strong similarity to gb|Y18349 U2 snRNP
auxiliary factor, small subunit from Oryza sativa. ESTs
gb|AA586295 and gb|AA597332 come from this gene
Length = 296
Score = 27.1 bits (57), Expect = 9.6
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 1 RRSRGYVHRSYHRRNLRSHGRSRSLQ-GNPRRG*QRIPGYRQ 123
R+ G RSY RR RS RSRS+ N R +R P +R+
Sbjct: 182 RKLFGRYRRSY-RRGSRSRSRSRSISPRNKRDNDRRDPSHRE 222
>At1g01320.1 68414.m00048 tetratricopeptide repeat (TPR)-containing
protein low similarity to SP|P46825 Kinesin light chain
(KLC) {Loligo pealeii}; contains Pfam profile PF00515:
TPR Domain
Length = 1797
Score = 27.1 bits (57), Expect = 9.6
Identities = 31/135 (22%), Positives = 48/135 (35%), Gaps = 3/135 (2%)
Frame = +2
Query: 80 ATLGEADKEYQ---AIVNLVHQVESIVKQHQIPGGLENPYTTLTAHELNRKXSDVRQLVP 250
ATLG +Y A+V L + E + QI LE P A +N + + P
Sbjct: 448 ATLGTISLKYCGYIAVVKLEKESEELSPPSQIVDLLEQPEGGANALNINSLRFLLHKSSP 507
Query: 251 QPTRRWPQSFASNRTTRTCEGSSQKRPTQSDLGSRGRWTPSPPSEWACRALWKTSCADLK 430
+ ++ PQ T+ S + + L W A W D K
Sbjct: 508 EQNKKTPQQHDDELTSSREFVSKMLEESIAKLEGE-EIDRDSIMRWELGACWIQHLQDQK 566
Query: 431 STKLECTLTSHTSRN 475
+T+ + T S+N
Sbjct: 567 NTEKDKKQTGEKSKN 581
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,599,293
Number of Sequences: 28952
Number of extensions: 315871
Number of successful extensions: 1249
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1246
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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