Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0286.Seq
         (627 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    24   1.2  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        22   3.7  
AF265298-1|AAG17641.1|  124|Tribolium castaneum putative cytochr...    22   3.7  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   6.4  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 626 LPPPGKSPNMTSGSPNPVLESFTAMRYL 543
           L P G +PN +S SP P     +  ++L
Sbjct: 58  LSPSGNTPNKSSTSPYPPNHPLSGSKHL 85


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 192 LGLLERHTFGY 160
           LG++ RH FGY
Sbjct: 7   LGIMHRHCFGY 17


>AF265298-1|AAG17641.1|  124|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 124

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +3

Query: 441 EDMKYSEESNNHGNRILPQYKAASRRWIRDCS 536
           ++MKY E       R+ P      RR   DC+
Sbjct: 42  QEMKYLEMVLKEAQRLYPSVPVIERRLEVDCN 73


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 211 NLHFVCTWLAGTAYFRLCT 155
           +L F C ++  T +F LCT
Sbjct: 82  HLLFYCPFIIFTVHFLLCT 100


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,976
Number of Sequences: 336
Number of extensions: 3100
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16083914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)