Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0286.Seq
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.08 |||phosphoinositide biosynthesis protein |Schizosacch...    26   3.9  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    26   5.1  
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     25   6.8  
SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi...    25   6.8  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    25   9.0  

>SPBC543.08 |||phosphoinositide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 250

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 191 STYKMQIGQWSLRSHFGLSKC*VN 262
           S Y + + +WS+ S+FG SK  +N
Sbjct: 38  SIYSIYVDKWSITSYFGNSKNLIN 61


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 626 LPPPGKSPNMTSGSPNPV 573
           LPP   +PN TS SP P+
Sbjct: 140 LPPDPSNPNATSSSPPPL 157


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -1

Query: 474 DCSILLNISCPLLDRLTTSSFVLQFSIMLISAPAMKHPGLPDIMTA 337
           D S LLN    +L+ L  +   ++    L   P M+H  + D+MTA
Sbjct: 499 DKSQLLNAYQAVLNCLQDNDLPVRIQAALALQPLMRHLEVHDVMTA 544


>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
           Hat1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -1

Query: 489 IYGFRDCSILLNISCPLL 436
           IYG++D ++ +   CPL+
Sbjct: 45  IYGYKDLNVTITYECPLM 62


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 15/64 (23%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
 Frame = +2

Query: 257 VNSLNTQVMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAGADISMIENC--KTKEEVVS 430
           +N LNT++    S  +NE++  +   + ++IS +P    A  ++  ++ C   ++EE++ 
Sbjct: 434 LNQLNTEIEARQSEKLNEVQEETQRLSQLLISSQP----ALTEVKHLKLCLSDSQEELLQ 489

Query: 431 LSKR 442
           L+ +
Sbjct: 490 LNAK 493


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,441,768
Number of Sequences: 5004
Number of extensions: 49455
Number of successful extensions: 153
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)