Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0286.Seq
(627 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0216 + 13870364-13870472,13871406-13871477,13871603-138716... 43 2e-04
02_02_0418 + 10000744-10000840,10000952-10001023,10001786-100018... 40 0.001
05_04_0012 + 17145112-17145205,17145681-17145752,17145832-171459... 40 0.002
05_01_0400 - 3159370-3159385,3159599-3159703,3159972-3160006,316... 39 0.003
02_05_0163 + 26400486-26400621,26401477-26401646,26402623-264027... 39 0.003
06_03_0633 + 22960514-22960619,22961402-22961503,22961850-22961908 36 0.020
02_05_0164 + 26405052-26405208,26405304-26405473,26406278-264063... 35 0.046
03_02_0770 + 11038971-11039392,11040071-11040353,11040697-11040798 32 0.32
01_03_0096 + 12492502-12492708,12500878-12501294,12501397-12501816 30 1.7
07_03_1765 - 29329350-29331290,29331705-29331827,29332205-29333026 29 2.3
12_01_0945 + 9351915-9351929,9352221-9352386,9352903-9353024,935... 29 3.0
01_06_0695 - 31292622-31293317 28 5.3
10_08_1007 - 22210263-22210400,22210506-22210547,22210626-222107... 28 7.0
10_08_0760 + 20381117-20381350,20381451-20381639,20382317-20382910 28 7.0
09_02_0103 - 4324578-4324639,4324848-4324983 28 7.0
06_03_0592 + 22585546-22588573,22588680-22589032 28 7.0
>01_03_0216 +
13870364-13870472,13871406-13871477,13871603-13871668,
13871767-13871823,13871917-13871984,13872068-13872149,
13872445-13872500,13872645-13872947,13873042-13873128,
13873199-13873373,13873481-13873602,13873689-13873852,
13873925-13874179,13874312-13874433,13874542-13874663,
13875111-13875259,13875346-13875484,13875715-13875750
Length = 727
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/38 (52%), Positives = 27/38 (71%)
Frame = +1
Query: 511 LGGGLETALACKYRIAVKDSKTGFGLPEVMLGLLPGGG 624
LGGGLE A+AC RI+ ++ GLPE+ LG++PG G
Sbjct: 116 LGGGLEVAMACHARISTPTAQ--LGLPELQLGVIPGFG 151
Score = 31.9 bits (69), Expect = 0.43
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Frame = +2
Query: 257 VNSLNTQVMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAGADISMIENCK-TKEEVVSL 433
VNSL+ V+ + E + ++A ++++GK G F G DIS + + K E +
Sbjct: 30 VNSLSIDVLLSLKENYAEALRRNDVKA-IVVTGKGGKFSGGFDISSFGSVQGGKVEQPKV 88
Query: 434 SKRGHEIFR-RIEQSRKPYIAAIQG 505
+I +E + KP +AAI G
Sbjct: 89 GYISIDIITDTLEAATKPSVAAIDG 113
>02_02_0418 +
10000744-10000840,10000952-10001023,10001786-10001848,
10001952-10002008,10002159-10002226,10002327-10002408,
10002517-10002572,10002934-10003236,10003638-10003724,
10004454-10004628,10004813-10004934,10005171-10005334,
10006201-10006455,10006979-10007100,10007220-10007341,
10007452-10007600,10007649-10007652
Length = 665
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/38 (47%), Positives = 26/38 (68%)
Frame = +1
Query: 511 LGGGLETALACKYRIAVKDSKTGFGLPEVMLGLLPGGG 624
LGGGLE + C RI+ +++ GLPE+ LG++PG G
Sbjct: 111 LGGGLELTMGCHARISTPEAQ--LGLPELTLGIIPGFG 146
Score = 31.9 bits (69), Expect = 0.43
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Frame = +2
Query: 257 VNSLNTQVMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAGADISMIENCKTKEEVVSLS 436
VN+L+ +++ + E ++A ++++G G F G DI++ V +
Sbjct: 26 VNALHPIIIQGLKEKYAEAMDRDDVKA-IVLTGAGGKFCGGFDINVFTEVHKTGNVSLMP 84
Query: 437 KRGHEIFRRI-EQSRKPYIAAIQG 505
E+ + E +KP +AAIQG
Sbjct: 85 DVSVELVSNLMEAGKKPSVAAIQG 108
>05_04_0012 +
17145112-17145205,17145681-17145752,17145832-17145911,
17146059-17146175,17146282-17146363,17147086-17147141,
17147258-17147560,17147658-17147744,17148118-17148292,
17148370-17148491,17149028-17149191,17149277-17149531,
17150419-17150540,17150656-17150777,17151302-17151450,
17151565-17151703,17151831-17151866
Length = 724
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/38 (44%), Positives = 25/38 (65%)
Frame = +1
Query: 511 LGGGLETALACKYRIAVKDSKTGFGLPEVMLGLLPGGG 624
LGGGLE + C R++ ++ GLPE+ LG++PG G
Sbjct: 113 LGGGLELVMVCHARVSTSSAQ--LGLPELQLGIIPGLG 148
>05_01_0400 -
3159370-3159385,3159599-3159703,3159972-3160006,
3160134-3160272,3160457-3160605,3161052-3161173,
3161296-3161417,3161779-3162033,3162108-3162271,
3162311-3162489,3162593-3162767,3162916-3163002,
3163144-3163446,3163539-3163594,3163813-3163894,
3163972-3164039,3164779-3164835,3164926-3164991,
3165121-3165192,3167363-3167459
Length = 782
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/38 (44%), Positives = 27/38 (71%)
Frame = +1
Query: 511 LGGGLETALACKYRIAVKDSKTGFGLPEVMLGLLPGGG 624
LGGGLE ++ C+ RI++ ++ GLPE+ LG++P G
Sbjct: 112 LGGGLEISMVCQARISIPTAQ--LGLPELQLGVIPAFG 147
>02_05_0163 +
26400486-26400621,26401477-26401646,26402623-26402713,
26402822-26402873,26403462-26403565,26403648-26403724,
26403890-26404069
Length = 269
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/38 (50%), Positives = 25/38 (65%)
Frame = +1
Query: 511 LGGGLETALACKYRIAVKDSKTGFGLPEVMLGLLPGGG 624
LGGGLE AL+C RI +++ GLPE L ++PG G
Sbjct: 117 LGGGLELALSCDLRICGENAT--LGLPETGLAIIPGAG 152
Score = 36.7 bits (81), Expect = 0.015
Identities = 13/46 (28%), Positives = 27/46 (58%)
Frame = +2
Query: 260 NSLNTQVMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAGADISMI 397
N++N + M + +V ++E + ++ ++ S PG F AGAD+ +
Sbjct: 59 NAINWEAMRLLRGVVEKVEADDTVKVVLVTSSVPGVFCAGADLKAL 104
>06_03_0633 + 22960514-22960619,22961402-22961503,22961850-22961908
Length = 88
Score = 36.3 bits (80), Expect = 0.020
Identities = 15/59 (25%), Positives = 31/59 (52%)
Frame = +2
Query: 257 VNSLNTQVMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAGADISMIENCKTKEEVVSL 433
+N++N ++ ++E ETN ++ ++ S P F AG D+ + N T E++ +
Sbjct: 30 LNAMNLEMDLRYKAFLDEWETNPSVKCVLVESSSPRAFSAGGDVKRLANDCTMPEIIEV 88
>02_05_0164 +
26405052-26405208,26405304-26405473,26406278-26406352,
26406570-26406660,26406768-26406848,26407192-26407353,
26407425-26407501,26407670-26407846
Length = 329
Score = 35.1 bits (77), Expect = 0.046
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = +1
Query: 514 GGGLETALACKYRIAVKDSKTGFGLPEVMLGLLPG 618
GGGLE AL+C RI +++ F LPE L ++PG
Sbjct: 150 GGGLELALSCDLRICGENAT--FSLPETGLAIIPG 182
>03_02_0770 + 11038971-11039392,11040071-11040353,11040697-11040798
Length = 268
Score = 32.3 bits (70), Expect = 0.32
Identities = 21/83 (25%), Positives = 43/83 (51%)
Frame = +2
Query: 257 VNSLNTQVMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAGADISMIENCKTKEEVVSLS 436
+N+L +M ++ ++ + G+ AAV+++G+ F +G D++ E K +V
Sbjct: 34 LNALTRPMMVSLAAAFRRLDADDGV-AAVVLAGRGRAFCSGVDLTAAEEV-FKGDV---K 88
Query: 437 KRGHEIFRRIEQSRKPYIAAIQG 505
+ ++E+ RKP + AI G
Sbjct: 89 DPAADPVVQMERCRKPIVGAIAG 111
>01_03_0096 + 12492502-12492708,12500878-12501294,12501397-12501816
Length = 347
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +2
Query: 314 ETNSGIEAAVIISGKPGCFIAGADISMIENCKTKEEVV--SLSKRGHEI 454
+ NSG+ A +I CF+ G D S++ N T E + S RG E+
Sbjct: 49 KNNSGVAAGLIRLHFHDCFVRGCDASVLINGSTTERSAGPNASLRGFEV 97
>07_03_1765 - 29329350-29331290,29331705-29331827,29332205-29333026
Length = 961
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +2
Query: 329 IEAAVIISGKPGCFIAGADISMIENCKTKEEVVSL--SKRGHE 451
+ A + G G F G D S + NC K V+ L S+RG E
Sbjct: 572 VGATDCVYGAQGAFYKGLDFSKVLNCDRKPAVLDLPPSRRGDE 614
>12_01_0945 +
9351915-9351929,9352221-9352386,9352903-9353024,
9353098-9353214,9356997-9357077,9357204-9357272,
9357727-9357790,9357988-9358067,9358164-9358247,
9358418-9358502,9359658-9359743,9359924-9360045,
9360841-9360901,9360981-9361166,9363622-9363723,
9363803-9363844,9363949-9364086
Length = 539
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +1
Query: 511 LGGGLETALACKYRIAVKDSKTGFGLPEVMLGLLPGGG 624
+GGG ++ ++R+ V DS T F +PE LGL P G
Sbjct: 247 MGGGAGVSIHGRFRV-VTDS-TVFAMPETALGLFPDIG 282
>01_06_0695 - 31292622-31293317
Length = 231
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -2
Query: 626 LPPPGKSPNMTSGSPNPVLESFTAMRYLHARAVSNPPPR 510
LP P + PN S S + S T+ + H RA P PR
Sbjct: 9 LPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47
>10_08_1007 -
22210263-22210400,22210506-22210547,22210626-22210727,
22212239-22212337,22212413-22212473,22213311-22213432,
22217700-22217786,22217958-22218041,22218141-22218220,
22218404-22218467,22218904-22218972,22219099-22219179,
22219626-22219694,22220108-22220140
Length = 376
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 511 LGGGLETALACKYRIAVKDSKTGFGLPEVMLGLLPGGG 624
+GGG ++ ++R+ + T F +PE LGL P G
Sbjct: 141 MGGGAGVSIHGRFRVVTES--TVFAMPETALGLFPDIG 176
>10_08_0760 + 20381117-20381350,20381451-20381639,20382317-20382910
Length = 338
Score = 27.9 bits (59), Expect = 7.0
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Frame = +2
Query: 278 VMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAGADIS-MIENCK----TKEEVVSLSKR 442
V +EVS V+ N G+ A ++ CF+ G D S +I++ K K+ + S R
Sbjct: 49 VQQEVSKAVS---ANPGLAAGLVRLHFHDCFVRGCDASVLIDSTKGNQAEKDAGPNTSLR 105
Query: 443 GHEIFRRIE 469
G E+ RI+
Sbjct: 106 GFEVVDRIK 114
>09_02_0103 - 4324578-4324639,4324848-4324983
Length = 65
Score = 27.9 bits (59), Expect = 7.0
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = +3
Query: 111 ALKILRSRKELF---ISGVHSRKYAVPASQVHTKCKLVNGVY-VVTLDSP 248
A+ + RS L+ I+ HSR +V + VH +CKL+N Y +TL P
Sbjct: 14 AVPVARSSPPLYAVNITTSHSR--SVTSRFVHPRCKLINDNYSPITLSQP 61
>06_03_0592 + 22585546-22588573,22588680-22589032
Length = 1126
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 143 IHIRCT*PKVCRSSKPSTYKMQIGQWSLRSHFGLSKC*VNSLN 271
+H +C P V KPS + + + S FGL++C N+ N
Sbjct: 946 LHNQCASPLVHCDLKPSNILLDLDMIAYVSDFGLARCLNNTSN 988
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,661,595
Number of Sequences: 37544
Number of extensions: 321935
Number of successful extensions: 970
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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