Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0286.Seq
(627 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19701| Best HMM Match : No HMM Matches (HMM E-Value=.) 71 8e-13
SB_54248| Best HMM Match : ECH (HMM E-Value=6.6e-11) 60 1e-09
SB_26566| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_20977| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_43237| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_6823| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.015
SB_23761| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.77
SB_20978| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_17070| Best HMM Match : MFS_1 (HMM E-Value=0.083) 29 4.1
SB_49303| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0037) 28 7.1
SB_43594| Best HMM Match : Glyco_hydro_67N (HMM E-Value=3.1) 28 7.1
SB_29506| Best HMM Match : 7tm_1 (HMM E-Value=0.46) 28 7.1
SB_3248| Best HMM Match : Phage_fiber_2 (HMM E-Value=4.9) 28 7.1
SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0) 27 9.4
SB_58262| Best HMM Match : Cytochrom_B_C (HMM E-Value=0.77) 27 9.4
>SB_19701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 509
Score = 70.9 bits (166), Expect = 8e-13
Identities = 31/94 (32%), Positives = 59/94 (62%)
Frame = +2
Query: 227 RSHFGLSKC*VNSLNTQVMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAGADISMIENC 406
R H L++ + + Q + + ++ EI N ++ +V++S KPGC+IAGADI+M++
Sbjct: 46 RLHVKLNRDGIYGIRQQPLLPLRKVMQEITHNPDVKCSVLMSAKPGCWIAGADINMLKAG 105
Query: 407 KTKEEVVSLSKRGHEIFRRIEQSRKPYIAAIQGS 508
+ +V ++K G ++++ +E S KP +AAI G+
Sbjct: 106 ENAAQVTEIAKGGQQVYQFLEDSPKPVVAAIMGT 139
>SB_54248| Best HMM Match : ECH (HMM E-Value=6.6e-11)
Length = 230
Score = 60.1 bits (139), Expect = 1e-09
Identities = 27/38 (71%), Positives = 29/38 (76%)
Frame = +1
Query: 511 LGGGLETALACKYRIAVKDSKTGFGLPEVMLGLLPGGG 624
+GGGLE AL+C YRIAV D KT PEVMLGLLPG G
Sbjct: 15 MGGGLELALSCHYRIAVNDGKTVLSAPEVMLGLLPGAG 52
>SB_26566| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1141
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/82 (29%), Positives = 46/82 (56%)
Frame = +2
Query: 260 NSLNTQVMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAGADISMIENCKTKEEVVSLSK 439
N+L +M ++ +V+E+E +A +I+ G G F++G D+S+++ T E +
Sbjct: 899 NALTGHMMVRLAEVVDELEKWQAGKA-LILHGDAGTFVSGGDLSVLKEIHTPGEGEQMCY 957
Query: 440 RGHEIFRRIEQSRKPYIAAIQG 505
H+ F R+++ +AAIQG
Sbjct: 958 FMHKTFARLQRLPLISLAAIQG 979
>SB_20977| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 240
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/88 (23%), Positives = 46/88 (52%)
Frame = +2
Query: 242 LSKC*VNSLNTQVMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAGADISMIENCKTKEE 421
LS+ VNS + + +EE+ + + ++E+N+ ++ S P F AG D+ ++
Sbjct: 3 LSRKPVNSFSLEFLEEIHDTLEDLESNTDCRGLIVTSSMPKVFSAGLDLVKELYKSDEKR 62
Query: 422 VVSLSKRGHEIFRRIEQSRKPYIAAIQG 505
+ +R +++ ++ SR +AA+ G
Sbjct: 63 LFVFWRRFQDVWMQLYGSRLATVAAVNG 90
>SB_43237| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 311
Score = 37.9 bits (84), Expect = 0.007
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +1
Query: 511 LGGGLETALACKYRIAVKDSKTGFGLPEVMLGLLPGGG 624
LGGG E A+ C I K FG PE+++G +PG G
Sbjct: 143 LGGGCELAMMCD--IIYASDKAKFGQPEILIGTIPGAG 178
>SB_6823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 287
Score = 36.7 bits (81), Expect = 0.015
Identities = 22/82 (26%), Positives = 42/82 (51%)
Frame = +2
Query: 260 NSLNTQVMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAGADISMIENCKTKEEVVSLSK 439
N++N++ +++S E + + AV+ +GK G F AG+D+ + + + S
Sbjct: 50 NAINSETADQLSETFRHFEIDDSVNVAVL-TGKGGNFCAGSDLQELAQKDAETYMKSFYP 108
Query: 440 RGHEIFRRIEQSRKPYIAAIQG 505
G E + ++ +P I AIQG
Sbjct: 109 PG-EGDGPMAEANQPVIGAIQG 129
Score = 31.9 bits (69), Expect = 0.44
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +1
Query: 511 LGGGLETALACKYRIAVKDSKTGFGLPEVMLGLLPGG 621
+GGGLE AL C R+ +DS GF + L+ GG
Sbjct: 132 VGGGLELALLCDLRVCEEDSVFGFFNRRFGVPLVDGG 168
>SB_23761| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 101
Score = 31.1 bits (67), Expect = 0.77
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 257 VNSLNTQVMEEVSNIVNEIETNSGIEAAVIIS 352
VNS N Q+MEE+ I+ ++E+N +I S
Sbjct: 70 VNSFNMQLMEEICLILEDLESNKDCRGLIITS 101
>SB_20978| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1683
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 511 LGGGLETALACKYRIAVKDSKTGFGLPEVMLGL 609
+ GG +LAC Y + D + GLPE+ LGL
Sbjct: 1525 IAGGCVLSLACDYSVMASDFR--IGLPELSLGL 1555
>SB_17070| Best HMM Match : MFS_1 (HMM E-Value=0.083)
Length = 313
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 236 SDYVNSIDQFAFCMYLACWNGILSAMYTGYE 144
SD VN++ + CM L ++S + TGY+
Sbjct: 163 SDCVNTLVLYQMCMVLTALTSVISILATGYQ 193
>SB_49303| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0037)
Length = 722
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Frame = +3
Query: 108 SALKILRSRKELFISGVHSRKYAVPASQVHTK-CKLVNGVYVVTLDSPNV--K*THLTPK 278
++L S+K++ SRKYA+P +++ T+ KL+ V V N+ K + ++P
Sbjct: 31 ASLNRRHSKKKVHADERSSRKYAIPIAELTTEMAKLLRDVKVFFTKDINLERKGSPISPS 90
Query: 279 *WKK 290
W K
Sbjct: 91 TWTK 94
>SB_43594| Best HMM Match : Glyco_hydro_67N (HMM E-Value=3.1)
Length = 342
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = +3
Query: 162 SRKYAVPASQVHTK-CKLVNGVYVVTLDSPNV--K*THLTPK*WKK 290
SRKYA+P +++ T+ KL+ V V N+ K + ++P WKK
Sbjct: 53 SRKYAIPIAELTTEMAKLLRDVKVFFTKDINLERKGSPISPSTWKK 98
>SB_29506| Best HMM Match : 7tm_1 (HMM E-Value=0.46)
Length = 194
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = -1
Query: 441 LLDRLTTSSFVLQFSIMLISAPAMKHPGLPDIMTAASIPEFVSISFTMLLTSSITWVLS 265
+ D L+ ++F + + ++ A K P L D S+PE V T S + VLS
Sbjct: 26 MADLLSLTTFPIYTIVQILQYAAGKSPPLNDDSAEVSLPEAVQQRRTKTFRSIVRMVLS 84
>SB_3248| Best HMM Match : Phage_fiber_2 (HMM E-Value=4.9)
Length = 256
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = +3
Query: 162 SRKYAVPASQVHTK-CKLVNGVYVVTLDSPNV--K*THLTPK*WKK 290
SRKYA+P +++ T+ KL+ V V N+ K + ++P WKK
Sbjct: 53 SRKYAIPIAELTTEMAKLLRDVKVFFTKDINLERKGSPISPSTWKK 98
>SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 3312
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +1
Query: 451 NIQKNRTITETVYCRNTRQRLGGGL--ETALACKYRIAVK 564
N+ +RTI TV C RQRL G + TA C+ R+ ++
Sbjct: 1376 NLIASRTIGITVVCAPVRQRLTGLVLNLTAQVCRARLCLR 1415
>SB_58262| Best HMM Match : Cytochrom_B_C (HMM E-Value=0.77)
Length = 393
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 511 LGGGLETALACKYRIAVKDS 570
+GGGLE AL C R+ +DS
Sbjct: 369 VGGGLELALLCDLRVCEEDS 388
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,114,149
Number of Sequences: 59808
Number of extensions: 371233
Number of successful extensions: 1053
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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