Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0286.Seq
         (627 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.46 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   5.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   5.6  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   7.4  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    21   9.8  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   9.8  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    21   9.8  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   9.8  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 11/49 (22%), Positives = 28/49 (57%)
 Frame = +2

Query: 257  VNSLNTQVMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAGADISMIEN 403
            +NS+  +  + ++++  +I TN+  + A  I GKP   +  +  S++++
Sbjct: 866  INSITVE-KDVINDVKTQITTNTPAKKATNIGGKPVAVVKSSAQSLLQS 913


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 117 KILRSRKELFISGVHSRKYAV 179
           ++LR RKELFI+ V    Y +
Sbjct: 409 RLLRKRKELFIAIVCFVSYLI 429


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 117 KILRSRKELFISGVHSRKYAV 179
           ++LR RKELFI+ V    Y +
Sbjct: 462 RLLRKRKELFIAIVCFVSYLI 482


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 275 QVMEEVSNIVNEIETNSGIEAAVIISGKPG 364
           ++ +EVS+ + +I  N+   A V ISG  G
Sbjct: 169 EIKKEVSSYIKKIGYNTASVAFVPISGWHG 198


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 275 QVMEEVSNIVNEIETNSGIEAAVIISGKPG 364
           ++ +EVS+ + +I  N    A V ISG  G
Sbjct: 96  EIKKEVSSYIKKIGYNPAAVAFVPISGWHG 125


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +1

Query: 394 DRKLQNKGRSCQSV*KRT*NIQKNRTITETVYCRNTRQ 507
           DRK + K +  + +   + N   N    + +YC N R+
Sbjct: 69  DRKEREKSKEHKIISSLSNNYNYNNNNYKKLYCNNYRK 106


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 275 QVMEEVSNIVNEIETNSGIEAAVIISGKPG 364
           ++ +EVS+ + +I  N    A V ISG  G
Sbjct: 112 EIKKEVSSYIKKIGYNPAAVAFVPISGWHG 141


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 275 QVMEEVSNIVNEIETNSGIEAAVIISGKPG 364
           ++ +EVS+ + +I  N    A V ISG  G
Sbjct: 169 EIKKEVSSYIKKIGYNPAAVAFVPISGWHG 198


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,271
Number of Sequences: 438
Number of extensions: 3405
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)