Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0283.Seq
         (712 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9YFU7 Cluster: Putative transcriptional regulator, Trm...    34   3.0  
UniRef50_Q5YS52 Cluster: Putative Rossmann-fold nucleotide-bindi...    33   5.2  
UniRef50_UPI0000F2B91D Cluster: PREDICTED: similar to CCDC79 pro...    33   9.2  

>UniRef50_Q9YFU7 Cluster: Putative transcriptional regulator, TrmB
           family; n=1; Aeropyrum pernix|Rep: Putative
           transcriptional regulator, TrmB family - Aeropyrum
           pernix
          Length = 248

 Score = 34.3 bits (75), Expect = 3.0
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -3

Query: 224 APHAVSCTRSISLPRIRAICRLISLRGLVSVRDSFGWTRRATPRAA 87
           +P   S    + LPR+  + R++  +GL +V  S GW R   PRAA
Sbjct: 36  SPKEASAMSGVPLPRVYDVIRVLESKGL-AVPSSEGWYRYVPPRAA 80


>UniRef50_Q5YS52 Cluster: Putative Rossmann-fold nucleotide-binding
           protein; n=3; Nocardiaceae|Rep: Putative Rossmann-fold
           nucleotide-binding protein - Nocardia farcinica
          Length = 392

 Score = 33.5 bits (73), Expect = 5.2
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -3

Query: 227 RAPHAVSCTRSISLPRIRAICRLISLRGLVSVRDSFGWTRRATPR 93
           R P  +  T  +S P +RA    + + GLV   D+ GW+R A PR
Sbjct: 340 RLPGELCGTTGLSTPAVRAALVALEMAGLVGA-DATGWSRLARPR 383


>UniRef50_UPI0000F2B91D Cluster: PREDICTED: similar to CCDC79
           protein; n=1; Monodelphis domestica|Rep: PREDICTED:
           similar to CCDC79 protein - Monodelphis domestica
          Length = 608

 Score = 32.7 bits (71), Expect = 9.2
 Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
 Frame = -1

Query: 205 ALAPSHSLVFVPYVALYLYVDSCRFETRSGGLAAP---RLAPRGTY--ALIMSACPS-CS 44
           +L  +  +V  PY    L  +SC +E RSGG A     R APRG    +L   +CPS C 
Sbjct: 542 SLICNKKIVLTPYKKKRLSNESCTYEERSGGTAVLLRFRAAPRGVTEPSLRPLSCPSYCL 601

Query: 43  T 41
           T
Sbjct: 602 T 602


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 659,254,644
Number of Sequences: 1657284
Number of extensions: 12404450
Number of successful extensions: 27538
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27525
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57024798702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)