Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0283.Seq
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.01c |mmm1|SPBC30B4.09c|Mdm10/Mdm12/Mmm1 complex subuni...    28   1.5  
SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|...    26   6.1  

>SPBC27B12.01c |mmm1|SPBC30B4.09c|Mdm10/Mdm12/Mmm1 complex subunit
           Mmm1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 346

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/37 (32%), Positives = 25/37 (67%)
 Frame = -3

Query: 605 VIISTTLLLSLFFNVLYDAPETITYQLLIKIPLILIY 495
           V + TTL++   ++ L+ +P  + +Q+L +I +I+IY
Sbjct: 215 VSLFTTLIVYSLYDSLHPSPGGLKHQVLNRITVIMIY 251


>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 711 AAYGNYYCNYYFVRFLVLGSLLQLVA*FINVL 616
           A + ++Y   +FV  L LGSL  L A  +NVL
Sbjct: 77  AQFSSFYDKIFFVDMLGLGSLFALAA--VNVL 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,848,423
Number of Sequences: 5004
Number of extensions: 56047
Number of successful extensions: 111
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)