Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0283.Seq
         (712 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0407 + 2901321-2901739,2902673-2902825,2902899-2902981,290...    31   0.68 
09_06_0018 + 20256603-20256881,20257003-20257200                       29   3.6  

>06_01_0407 +
           2901321-2901739,2902673-2902825,2902899-2902981,
           2903081-2903180,2904580-2904693,2905292-2905434,
           2905825-2905919
          Length = 368

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 200 RSISLPRIRAICRLISLRGLVSVRDSFGWTRRATPRA 90
           R +S P   A C L  L G ++   SF W+  + PRA
Sbjct: 21  RILSTPAFSAACLLFGLAGFLAAALSFSWSPGSAPRA 57


>09_06_0018 + 20256603-20256881,20257003-20257200
          Length = 158

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -1

Query: 148 VDSCRFETRSGGLAAPRLAPRGTYALIMSA 59
           V SC   TRS   + PRL PR   AL + A
Sbjct: 21  VSSCATRTRSTASSTPRLTPRAATALRLEA 50


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,383,587
Number of Sequences: 37544
Number of extensions: 327692
Number of successful extensions: 681
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)