Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0283.Seq
         (712 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27208| Best HMM Match : ICAT (HMM E-Value=1.8e-09)                  30   1.6  
SB_29945| Best HMM Match : DUF125 (HMM E-Value=1.7)                    29   2.8  
SB_11113| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  

>SB_27208| Best HMM Match : ICAT (HMM E-Value=1.8e-09)
          Length = 569

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -1

Query: 196 PSHSLVFVPYVALYLYVDSCR-FETRSGG 113
           PSH+L  V Y+  Y+YV SC+ FE   GG
Sbjct: 379 PSHALPPVQYITDYVYVFSCQGFELPCGG 407


>SB_29945| Best HMM Match : DUF125 (HMM E-Value=1.7)
          Length = 608

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 29/111 (26%), Positives = 42/111 (37%), Gaps = 2/111 (1%)
 Frame = -2

Query: 345 RNDAWSRSKSIAKHFNLFNYRL*HVGRRA*LNINKNVI*KSSTRSFMHS-LHLTPSYSCH 169
           R  AW   K    H     +      RRA  + + +   + + R+  H+ +H   +    
Sbjct: 292 RRHAWREHKKAGTHTRRHMHA--QKARRAVTHADMHA--RKARRAVTHADMHAHKARRAV 347

Query: 168 MSPYIFTWTR-VGSRLVRVDSPRHASRRAVPML*SCPHVRHVQRVRSSCIT 19
               I T  R VG  +   D   H +RRAV     C H RHV     S +T
Sbjct: 348 THADICTHARHVGRAVTHADMHAHKARRAVTHADICTHTRHVAWAIGSFMT 398


>SB_11113| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 535

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -3

Query: 644 SWLHNLLMYCNYFVIISTTLLLSLFFNVLYDAPETITYQLLIKIP 510
           SW H +L   +   I S+ +L+  +F++ YD P+  T   L+ IP
Sbjct: 203 SWQHEVLWVLHTISIDSSLVLVVAYFSMWYD-PDVNTVSGLLDIP 246


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,033,694
Number of Sequences: 59808
Number of extensions: 406723
Number of successful extensions: 931
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)