Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0283.Seq
         (712 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16850.1 68417.m02545 expressed protein                             29   4.0  
At5g37570.1 68418.m04526 pentatricopeptide (PPR) repeat-containi...    27   9.3  
At5g02360.1 68418.m00159 DC1 domain-containing protein contains ...    27   9.3  
At4g12330.1 68417.m01951 cytochrome P450 family protein contains...    27   9.3  

>At4g16850.1 68417.m02545 expressed protein
          Length = 313

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/51 (21%), Positives = 29/51 (56%)
 Frame = +3

Query: 351 HLTLSVCRPFLRKS*FKIREF*NIHHFRYSVSRLWEKSCKATTSSIYVVYQ 503
           HL+L++    L+   F++    N+ H R+   ++W++S +   S +++ ++
Sbjct: 46  HLSLTLTSFRLKNHVFRLEALANVVHTRFEARQIWQESREDAVSLLHLKFR 96


>At5g37570.1 68418.m04526 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 550

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = -3

Query: 647 YSWLHNLLMYCNYFVIISTTLLLSLFFNVLYDAPETITYQLLIKI 513
           Y W H +  Y N F+   T  +L          P+  T+ L++K+
Sbjct: 75  YLWNHLIKGYSNKFLFFETVSILMRMMRTGLARPDEYTFPLVMKV 119


>At5g02360.1 68418.m00159 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 342

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +3

Query: 366 VCRPFLRKS*FKIREF*NIHHFRYSVSRLWEKSCKATTSSIYVVYQNKWY 515
           V  PF+  S   I  F + HH +  +SR++++  K   + I  +Y+  +Y
Sbjct: 187 VVEPFITISDGIILHFSHGHHLKLKISRVYDEK-KVCQACILPIYEGSYY 235


>At4g12330.1 68417.m01951 cytochrome P450 family protein contains
           Pfam profile:PF00067 cytochrome p450
          Length = 518

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -1

Query: 226 ELHTQFHALAPSHSLVF 176
           ELHT FH+LA  H  VF
Sbjct: 65  ELHTYFHSLAQKHGPVF 81


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,410,425
Number of Sequences: 28952
Number of extensions: 276910
Number of successful extensions: 536
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)