Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0282.Seq
(787 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ... 56 4e-09
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 30 0.33
SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyc... 29 0.57
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 29 0.76
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su... 29 0.76
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 27 3.0
SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomy... 27 4.0
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 26 5.3
SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni... 26 5.3
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe... 26 7.0
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 25 9.3
>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 56.4 bits (130), Expect = 4e-09
Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Frame = +3
Query: 216 SSLW*RCSTVL*KAEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLGEPGA-EN 392
S+ + R S + K T ++ K L VA +SD+GLCG +H+ +S++IR L +P EN
Sbjct: 72 SNKYYRVSDEVFKEAGTKAPEEGKTLMVACSSDKGLCGGIHSSISRLIRRELHDPKTFEN 131
Query: 393 IKVICVGDKSRGILQRLYGKHIISVANEIGRLPPTFLDAV 512
+ +G+K R L R + IG P+F +A+
Sbjct: 132 TSLCILGEKVRTQLLRFCPESFYLTFAHIGGASPSFEEAL 171
Score = 52.8 bits (121), Expect = 5e-08
Identities = 25/52 (48%), Positives = 37/52 (71%)
Frame = +1
Query: 70 YHQPNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPY 225
+H + ATLK I RLKS+KNI+KIT+++K V+ K TRA+R ++A+ Y
Sbjct: 24 FHASSPCEATLKEIEQRLKSIKNIEKITKTIKTVAQTKLTRAQRAMEASNKY 75
Score = 31.5 bits (68), Expect = 0.14
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +1
Query: 640 ERHKLTAYDSLDSDVLQSYTEFSLASLLFYALKEGACSEQS 762
E L+AY+ D +V Q EF+ A+ +F A+ E CSE S
Sbjct: 215 ESPNLSAYEVSD-EVHQPLMEFAFANAIFSAMAEAHCSEMS 254
Score = 30.7 bits (66), Expect = 0.25
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +2
Query: 512 QLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESA 646
Q+++ IL ++ ++YNKF S VS+ LYT K+I +
Sbjct: 172 QISSNILEHAKDYDRIVLVYNKFASAVSFETVMKNLYTTKAINES 216
>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 580
Score = 30.3 bits (65), Expect = 0.33
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Frame = +3
Query: 267 PPEDD-PKQLFVAMTSDR----GLCGAVHTGVSKVIRNRLGEPGAENIKVICVGDKSRGI 431
PPED P++L +T+ G+ GA+ TGV +N L E GA ++ +IC +
Sbjct: 70 PPEDGKPQKLKRTLTARHIQMIGIGGAIGTGVWVGSKNTLREGGAASV-LICYSLVGSMV 128
Query: 432 LQRLYGKHIISVA 470
L +Y ++VA
Sbjct: 129 LMTVYSLGELAVA 141
>SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 349
Score = 29.5 bits (63), Expect = 0.57
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Frame = +3
Query: 291 LFVAMTSDRGLC-GAVHTGVSKVIRNRLGEPGAENIKVICVGDKSRGILQRLYGKHIISV 467
+F M + L G H +I LG P E I+ IC + R +Q L K +
Sbjct: 203 IFAEMIEGKPLFPGRDHVNQFSIITELLGTPPMEVIETICSKNTLR-FVQSLPQKEKVPF 261
Query: 468 ANEIGRLPPTFLDAVSWPLPFSPQ 539
A + P +D + L F P+
Sbjct: 262 AEKFKNADPDAIDLLEKMLVFDPR 285
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 29.1 bits (62), Expect = 0.76
Identities = 18/59 (30%), Positives = 32/59 (54%)
Frame = +3
Query: 384 AENIKVICVGDKSRGILQRLYGKHIISVANEIGRLPPTFLDAVSWPLPFSPQDTSLVPE 560
A N++V V D G ++ + + A+ + + PP+ LDAV P+P +TS+V +
Sbjct: 613 AGNLEVTSVSDNKLGATVQVVEQKVDDKADALTK-PPS-LDAVKEPIPVPSVETSVVAQ 669
>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 29.1 bits (62), Expect = 0.76
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 617 GASRTGRKRPQT*TCCK*FFRNQTRILR*EWQW 519
GAS+T RP + +C F N+ L+ EW W
Sbjct: 45 GASKTKHGRPWSISCLVYGFPNKVSALKFEWNW 77
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 27.1 bits (57), Expect = 3.0
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 145 KITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYERLRLHLLKMTPSNCLL 300
++ QS + KYT + K +G V Y L HLL++ P+ C+L
Sbjct: 299 RLRQSPSINGTPKYTGLIQCFKLVW-MEQGIVGLYGGLTAHLLRVVPNACIL 349
>SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 166
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = -2
Query: 735 QRVEQQRGQRELRVGLEHVAVQRVVRSQ 652
+R+EQ+R Q+E + L+ QR++RS+
Sbjct: 105 ERLEQERRQKEEAIALQKQQQQRLLRSK 132
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 26.2 bits (55), Expect = 5.3
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -1
Query: 382 PGS-PRRLRITLDTP-VCTAPHKPLSEVIATNNCLGSSSGGVTSAFHRTVL 236
PG PR + I LD V T ++ +GS + G TSA RTVL
Sbjct: 215 PGQLPRSIDILLDDDLVDTVKPGDRVNIVGQYRSMGSKTSGNTSATFRTVL 265
>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 355
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 673 DSDVLQSYTEFSLASLLFYALKEGACSEQ 759
D D+ Q Y ++ASLL ++L + CS Q
Sbjct: 146 DQDMRQLYMATTIASLLDFSLSDPLCSIQ 174
>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +1
Query: 472 MRSDVSHLLSWTQSVGHCHSHLRIRVWFRKNHLQQVQVCGLLR 600
+ V +SW S+GHC R + ++ + Q C LL+
Sbjct: 531 LSKQVGKKISWYASLGHCIVKARFPLGNKELSISLFQACVLLQ 573
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1385
Score = 25.4 bits (53), Expect = 9.3
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 124 KSVKNIQKITQSMKMVSAAKYTRAERDLK 210
+ VKN+Q S+K +SAA +TR +K
Sbjct: 958 QQVKNMQLELASLKQISAAFFTRIPLKIK 986
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,284,327
Number of Sequences: 5004
Number of extensions: 68576
Number of successful extensions: 216
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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