Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0282.Seq
(787 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0571 - 19602755-19603831 49 5e-06
10_05_0025 + 8215685-8215716,8215859-8215937,8216340-8216412,821... 41 0.001
06_03_1337 + 29434240-29434449,29434504-29434675,29435067-294351... 31 1.4
07_01_0696 - 5261008-5263128 30 2.4
08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034 29 4.2
02_01_0278 - 1851338-1851412,1851579-1851819,1851946-1852047,185... 29 4.2
08_01_0543 - 4721424-4721477,4721728-4721769,4722014-4722071,472... 29 5.5
12_02_0115 - 13809015-13809068,13809530-13809637,13811004-138111... 28 7.3
03_05_0640 - 26326832-26327166,26327295-26327529,26327665-263279... 28 7.3
01_06_0030 + 25756294-25756575,25756977-25757101,25757276-257573... 28 7.3
01_01_0529 + 3874865-3876285,3876352-3876367 28 7.3
02_04_0275 - 21469391-21470650 28 9.7
>07_03_0571 - 19602755-19603831
Length = 358
Score = 48.8 bits (111), Expect = 5e-06
Identities = 21/49 (42%), Positives = 36/49 (73%)
Frame = +1
Query: 97 TLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQ 243
+L+ + R+ SV+N QKIT++MK+V+AAK RA+ + ++RP+ E V+
Sbjct: 37 SLRELRSRIDSVRNTQKITEAMKLVAAAKVRRAQEAVVSSRPFSEALVE 85
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +3
Query: 285 KQLFVAMTSDRGLCGAVHTGVSKVIRNRLGEPGAENIK--VICVGDKSRGILQR 440
K V +T +RGLCG+ + V K R+ E ++ V+ VG K R
Sbjct: 111 KVALVVLTGERGLCGSFNNNVLKKAETRIEELKQLGLEYTVVSVGKKGNAYFIR 164
>10_05_0025 +
8215685-8215716,8215859-8215937,8216340-8216412,
8216712-8216864,8217456-8217569,8217649-8217776,
8219004-8219099,8219479-8219601,8219694-8219810,
8219983-8220104,8220439-8220508
Length = 368
Score = 41.1 bits (92), Expect = 0.001
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Frame = +3
Query: 267 PPEDDPKQLFVAMTSDRGLCGAVHT---GVSKVIRNRLGEPGAENIKVICVGDKSRGILQ 437
P D K + VA+TSD+GLCG +++ VSK + P E+ K + +G+K + L
Sbjct: 112 PSVDVKKNVIVAITSDKGLCGGINSTSVKVSKALHKLTSGPEKES-KYVILGEKGKVQLI 170
Query: 438 RLYGKHIISVANEIGRLPPTFLDAVSW 518
R +I +E+ + P + W
Sbjct: 171 RDSKDNIEMTVSELQKNPINYTQDKEW 197
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/27 (62%), Positives = 25/27 (92%)
Frame = +1
Query: 103 KAISIRLKSVKNIQKITQSMKMVSAAK 183
+A+ R+KSV+NIQKIT++MKMV+A+K
Sbjct: 60 RALRTRMKSVRNIQKITKAMKMVAASK 86
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 676 SDVLQSYTEFSLASLLFYALKEGACSE 756
S++LQ+ TEF + +++ A E ACSE
Sbjct: 292 SEILQNLTEFQFSCVMYNAALENACSE 318
>06_03_1337 +
29434240-29434449,29434504-29434675,29435067-29435152,
29435351-29435759,29435893-29436020,29436094-29436153,
29436501-29436650,29436771-29436926,29437045-29437182,
29437270-29437343,29437752-29437853,29437951-29438191,
29438651-29438668
Length = 647
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/69 (27%), Positives = 31/69 (44%)
Frame = +3
Query: 354 VIRNRLGEPGAENIKVICVGDKSRGILQRLYGKHIISVANEIGRLPPTFLDAVSWPLPFS 533
+I + LG P +E + I +K+R L + KH + + + P L + L F
Sbjct: 390 IITDLLGTPSSETLSRIR-NEKARRYLSTMRKKHAVPFSQKFRNTDPLALRLLERLLAFD 448
Query: 534 PQDTSLVPE 560
P+D S E
Sbjct: 449 PKDRSSAEE 457
>07_01_0696 - 5261008-5263128
Length = 706
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 667 SLDSDVLQSYTEFSLASLLFYALKEGACSEQSPA 768
S+D D LQS+ AS LF +L +G+C + A
Sbjct: 429 SIDEDELQSFVPEFAASNLFVSLPQGSCEADAEA 462
>08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034
Length = 930
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -3
Query: 545 RILR*EWQWPTDCVQESRWETSDLISNTNDVLSVQSLQ 432
R+L + P D V E R T L+S+ N++ +++SL+
Sbjct: 691 RVLNITFSKPVDMVDEVRKYTDSLVSSLNELFNLESLK 728
>02_01_0278 -
1851338-1851412,1851579-1851819,1851946-1852047,
1852291-1852364,1852455-1852592,1852848-1853003,
1853364-1853513,1853808-1853867,1853946-1854073,
1854209-1854617,1855571-1855628,1856435-1856493,
1857478-1857606,1857765-1857774,1858134-1858183,
1858633-1858854
Length = 686
Score = 29.1 bits (62), Expect = 4.2
Identities = 19/69 (27%), Positives = 31/69 (44%)
Frame = +3
Query: 354 VIRNRLGEPGAENIKVICVGDKSRGILQRLYGKHIISVANEIGRLPPTFLDAVSWPLPFS 533
+I + LG P +E + I + +RG L + KH I +++ P L + L F
Sbjct: 410 LITDLLGTPSSETLSRIR-NENARGYLTGMQRKHPIPFSHKFHNADPLALRLLERLLAFD 468
Query: 534 PQDTSLVPE 560
P+D E
Sbjct: 469 PKDRPTAEE 477
>08_01_0543 -
4721424-4721477,4721728-4721769,4722014-4722071,
4722559-4722716
Length = 103
Score = 28.7 bits (61), Expect = 5.5
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Frame = +3
Query: 321 LCGAVHTGVSKVIRN-RLGEPGAENIKVICVGD------KSRGILQRLYGKHIISVANEI 479
LC A H G++ +I R G N K+ G + + + + LY + + V ++
Sbjct: 34 LCAAFHAGMALIINGVRRGRENENNCKICLSGKLNKYDMRGKDLHEVLYKEINVDVMEKV 93
Query: 480 GRLPPTF 500
G L P F
Sbjct: 94 GSLDPKF 100
>12_02_0115 -
13809015-13809068,13809530-13809637,13811004-13811114,
13811891-13811988,13813448-13813563,13814201-13814433,
13816015-13816212,13820448-13820572,13820700-13820787,
13822227-13822332,13823243-13823331,13823427-13823570,
13824174-13824266,13824442-13824508,13825251-13825387,
13825471-13825566,13826322-13826600
Length = 713
Score = 28.3 bits (60), Expect = 7.3
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +2
Query: 503 GRSQLATAILTSGYEFGSGKI-IYNKFKSVVSYAQSDLPLYTKKSIESATS*LRTTLWTA 679
G +Q+ +A L + E + I+ K S+ ++ S LP + +A +T+++T
Sbjct: 425 GNAQICSAFLANIDEHKYASVWIFGKSYSLPPWSVSILPDCENVAFNTARIGAQTSVFTV 484
Query: 680 TCSNPTRSSR 709
+P+RSSR
Sbjct: 485 ESGSPSRSSR 494
>03_05_0640 -
26326832-26327166,26327295-26327529,26327665-26327908,
26328389-26328507,26328860-26329050,26329133-26329220,
26331653-26331715,26331816-26333944,26334084-26334186
Length = 1168
Score = 28.3 bits (60), Expect = 7.3
Identities = 22/73 (30%), Positives = 27/73 (36%), Gaps = 4/73 (5%)
Frame = -1
Query: 394 MFSAPGSPRRLRITLDTPVCTAPHKPLSEVIATNNCLGSSSGGVTSAFHRTVLHLHHR-- 221
M S G+PRRLR++ D TAP + V A S G HH
Sbjct: 125 MASEAGAPRRLRLSFDGAPNTAPPAASTPVTAAAGSRHSFGGEEERRVENPPCKNHHHAT 184
Query: 220 --DEQLSGHAQHG 188
D+ S A G
Sbjct: 185 AFDDAASAEADQG 197
>01_06_0030 +
25756294-25756575,25756977-25757101,25757276-25757313,
25757501-25757611,25757703-25757782,25758264-25758318,
25758465-25758851,25759080-25759223,25759630-25759671,
25759755-25759837
Length = 448
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -1
Query: 379 GSPRRLRITLDTPVCTAPHKPLSEVIATNNCLGSSSGG 266
G PR R L P+C +PL ++A+ +G GG
Sbjct: 317 GEPRNHRWPLQPPLCLQFQQPLPVLLASAGRMGGDVGG 354
>01_01_0529 + 3874865-3876285,3876352-3876367
Length = 478
Score = 28.3 bits (60), Expect = 7.3
Identities = 22/72 (30%), Positives = 35/72 (48%)
Frame = +3
Query: 306 TSDRGLCGAVHTGVSKVIRNRLGEPGAENIKVICVGDKSRGILQRLYGKHIISVANEIGR 485
+S L GA + + VI NR+G ++ + GD++ + R G ISV+ E+
Sbjct: 57 SSALSLDGAGDSNPTWVILNRVGAR-RDSFR----GDRTTSVASRTSGGKEISVSFELAP 111
Query: 486 LPPTFLDAVSWP 521
P T L + WP
Sbjct: 112 PPETSLLTLDWP 123
>02_04_0275 - 21469391-21470650
Length = 419
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/52 (25%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +1
Query: 124 KSVKNIQKITQSMKMVSAAKYTRAERD-LKAARPYGEGAVQFYERLRLHLLK 276
++++ ++ + +++ + R ERD L+AAR + VQF+ ++++ L K
Sbjct: 267 QAIRRFGEVYERVELAKREQELRMERDRLEAARELEDQRVQFFLKMQMELSK 318
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,055,368
Number of Sequences: 37544
Number of extensions: 511797
Number of successful extensions: 1473
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1472
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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