Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0282.Seq
(787 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.) 80 2e-15
SB_14419| Best HMM Match : E1-E2_ATPase (HMM E-Value=0) 32 0.46
SB_30760| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045) 29 5.6
SB_44871| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_23672| Best HMM Match : PHD (HMM E-Value=0.00049) 28 7.5
SB_35341| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=2.9e-14) 28 9.9
SB_10578| Best HMM Match : NUMOD3 (HMM E-Value=3.2) 28 9.9
SB_5783| Best HMM Match : PIR (HMM E-Value=6.1) 28 9.9
>SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 328
Score = 79.8 bits (188), Expect = 2e-15
Identities = 31/86 (36%), Positives = 55/86 (63%)
Frame = +3
Query: 252 KAEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLGEPGAENIKVICVGDKSRGI 431
K E+ +DPK L V ++SDRGLCG +H+G++K ++ + + N+ ++ GDK++ I
Sbjct: 110 KVEIKQESEDPKHLIVVLSSDRGLCGGIHSGLAKAVKASIAGNPSRNVGIVSFGDKTKQI 169
Query: 432 LQRLYGKHIISVANEIGRLPPTFLDA 509
L R GK+++ ++G+ PP F +A
Sbjct: 170 LSRTLGKNMLMSFMDVGKKPPLFCEA 195
Score = 76.6 bits (180), Expect = 2e-14
Identities = 34/65 (52%), Positives = 51/65 (78%)
Frame = +1
Query: 109 ISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYERLRLHLLKMTPS 288
+S+RL+SVKNIQKIT+SMKMVSAAK+ RAE++LK+AR YG+GA Y+++ + P
Sbjct: 62 VSLRLRSVKNIQKITKSMKMVSAAKFGRAEKELKSARAYGDGATALYDKVEIKQESEDPK 121
Query: 289 NCLLL 303
+ +++
Sbjct: 122 HLIVV 126
Score = 51.2 bits (117), Expect = 9e-07
Identities = 20/37 (54%), Positives = 31/37 (83%)
Frame = +1
Query: 652 LTAYDSLDSDVLQSYTEFSLASLLFYALKEGACSEQS 762
+++YD LDS+V++ Y EF+LAS+LF+ +KE +CSE S
Sbjct: 246 MSSYDELDSEVIRCYQEFNLASMLFFGMKEQSCSEHS 282
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/55 (36%), Positives = 33/55 (60%)
Frame = +2
Query: 488 PTYFLGRSQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESATS 652
P F + LA IL +G++F +G + YN F+SVVS+ S +Y+ ++ +A S
Sbjct: 189 PPLFCEATFLAQEILDAGFDFNTGDMFYNVFRSVVSFRASTKSIYSFDNLNNAAS 243
>SB_14419| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)
Length = 543
Score = 32.3 bits (70), Expect = 0.46
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = +3
Query: 231 RCSTVL*KAEVTPPEDDPKQLFVAMTSDRGLCG 329
RCST+L K E+ P +DD KQ F D G G
Sbjct: 485 RCSTILIKGELKPLDDDMKQAFEMAYLDLGGMG 517
>SB_30760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1868
Score = 29.5 bits (63), Expect = 3.2
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -1
Query: 277 SSGGVTSAFHRTVLHLHHRDEQLSGHAQHGC 185
S G + +R LH+ H +++L H H C
Sbjct: 1059 SLGNCDGSSNRNTLHVKHANQRLGSHGNHSC 1089
>SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045)
Length = 1050
Score = 28.7 bits (61), Expect = 5.6
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -2
Query: 171 HHLHGLCDFLDIFHRFKTDGNGLQSSHIPVWL 76
+H+ C+ + F+R + G G H+ VWL
Sbjct: 595 NHIRNRCNVENFFYRIEFQGRGTAHVHLLVWL 626
>SB_44871| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 152
Score = 28.3 bits (60), Expect = 7.5
Identities = 18/69 (26%), Positives = 34/69 (49%)
Frame = -1
Query: 568 NDFSGTKLVS*GENGSGQLTASKKVGGRRPISLATLMMCFPYNLCRIPRDLSPTQITLMF 389
ND T+ GE+ +G +T ++ + GR ++ + FP + C + T I+++F
Sbjct: 21 NDIKNTRAQVWGES-AGDITETRGLRGRALSLASSASLVFPSHECLLDPTSCTTGISVLF 79
Query: 388 SAPGSPRRL 362
S RR+
Sbjct: 80 WFKYSERRM 88
>SB_23672| Best HMM Match : PHD (HMM E-Value=0.00049)
Length = 370
Score = 28.3 bits (60), Expect = 7.5
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = -3
Query: 476 LISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFGYTSVYSSAQTSVRGHSN 297
LI N DV +D+ + HTD+ V +R E V DH T+ + + S + S+
Sbjct: 62 LIRNNADVDEGME-EDSQMPLDHTDNTPVTHSREFEAVDDHTPPTTPTETTRKSAKRQSD 120
Query: 296 KQ 291
Q
Sbjct: 121 SQ 122
>SB_35341| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=2.9e-14)
Length = 490
Score = 27.9 bits (59), Expect = 9.9
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 332 CTHWCIQSDPQPSR 373
C+ WCIQ PQP R
Sbjct: 324 CSKWCIQGIPQPER 337
>SB_10578| Best HMM Match : NUMOD3 (HMM E-Value=3.2)
Length = 379
Score = 27.9 bits (59), Expect = 9.9
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -1
Query: 271 GGVTSAF-HRTVLHLHHRDEQLSGHAQHGCI*QLTPSSWTV*FSG 140
GGV F TV+ H L H +H + LT SWTV F+G
Sbjct: 244 GGVEFIFLMETVIQPRHPRLSLYSHREH--VPDLTHDSWTVPFTG 286
>SB_5783| Best HMM Match : PIR (HMM E-Value=6.1)
Length = 215
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 18 NVGTLRTGCRHPSRGGGLP 74
N+ TL TG R P GGG+P
Sbjct: 26 NLNTLPTGARQPVPGGGVP 44
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,949,420
Number of Sequences: 59808
Number of extensions: 570408
Number of successful extensions: 1696
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1696
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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