Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0282.Seq
(787 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC084158-5|AAO21417.1| 200|Caenorhabditis elegans Hypothetical ... 89 3e-18
AC084158-4|AAK68562.1| 299|Caenorhabditis elegans Hypothetical ... 89 3e-18
AC084158-3|AAL00872.1| 313|Caenorhabditis elegans Hypothetical ... 89 3e-18
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 31 1.2
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 31 1.2
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr... 29 5.0
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr... 29 5.0
>AC084158-5|AAO21417.1| 200|Caenorhabditis elegans Hypothetical
protein Y69A2AR.18c protein.
Length = 200
Score = 89.0 bits (211), Expect = 3e-18
Identities = 40/79 (50%), Positives = 53/79 (67%)
Frame = +3
Query: 273 EDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLGEPGAENIKVICVGDKSRGILQRLYGK 452
++ KQ+ V +TSDRGLCG VH+ + K +N L G + I+V+ +GDKSR LQRLY
Sbjct: 90 QESKKQVLVLITSDRGLCGGVHSSIVKEAKNILNNAGDKEIRVVAIGDKSRAGLQRLYAN 149
Query: 453 HIISVANEIGRLPPTFLDA 509
I+ NEIGR PP+F DA
Sbjct: 150 SILLSGNEIGRAPPSFADA 168
Score = 84.6 bits (200), Expect = 7e-17
Identities = 41/58 (70%), Positives = 48/58 (82%)
Frame = +1
Query: 85 RNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYERL 258
R ATLK ISIRLKSVKNIQKIT+SMKMV+AAKY +AER+LK AR YG GA F++ +
Sbjct: 23 RGFATLKDISIRLKSVKNIQKITKSMKMVAAAKYAKAERELKGARAYGVGAKTFFDNI 80
>AC084158-4|AAK68562.1| 299|Caenorhabditis elegans Hypothetical
protein Y69A2AR.18a protein.
Length = 299
Score = 89.0 bits (211), Expect = 3e-18
Identities = 40/79 (50%), Positives = 53/79 (67%)
Frame = +3
Query: 273 EDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLGEPGAENIKVICVGDKSRGILQRLYGK 452
++ KQ+ V +TSDRGLCG VH+ + K +N L G + I+V+ +GDKSR LQRLY
Sbjct: 90 QESKKQVLVLITSDRGLCGGVHSSIVKEAKNILNNAGDKEIRVVAIGDKSRAGLQRLYAN 149
Query: 453 HIISVANEIGRLPPTFLDA 509
I+ NEIGR PP+F DA
Sbjct: 150 SILLSGNEIGRAPPSFADA 168
Score = 84.6 bits (200), Expect = 7e-17
Identities = 41/58 (70%), Positives = 48/58 (82%)
Frame = +1
Query: 85 RNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYERL 258
R ATLK ISIRLKSVKNIQKIT+SMKMV+AAKY +AER+LK AR YG GA F++ +
Sbjct: 23 RGFATLKDISIRLKSVKNIQKITKSMKMVAAAKYAKAERELKGARAYGVGAKTFFDNI 80
Score = 56.4 bits (130), Expect = 2e-08
Identities = 24/40 (60%), Positives = 32/40 (80%)
Frame = +1
Query: 643 RHKLTAYDSLDSDVLQSYTEFSLASLLFYALKEGACSEQS 762
+ L+ YDS+D DVLQSY+E+SLA L++Y +KE A SEQS
Sbjct: 214 KEALSTYDSVDDDVLQSYSEYSLAQLIYYGMKESATSEQS 253
Score = 48.0 bits (109), Expect = 8e-06
Identities = 23/53 (43%), Positives = 35/53 (66%)
Frame = +2
Query: 485 SPTYFLGRSQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIES 643
+P F S A AIL SGY+F +G I++N+FK+VVSY S L + ++I++
Sbjct: 161 APPSFADASIAAKAILDSGYDFETGTILFNRFKTVVSYETSKLQILPLEAIKA 213
>AC084158-3|AAL00872.1| 313|Caenorhabditis elegans Hypothetical
protein Y69A2AR.18b protein.
Length = 313
Score = 89.0 bits (211), Expect = 3e-18
Identities = 40/79 (50%), Positives = 53/79 (67%)
Frame = +3
Query: 273 EDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLGEPGAENIKVICVGDKSRGILQRLYGK 452
++ KQ+ V +TSDRGLCG VH+ + K +N L G + I+V+ +GDKSR LQRLY
Sbjct: 90 QESKKQVLVLITSDRGLCGGVHSSIVKEAKNILNNAGDKEIRVVAIGDKSRAGLQRLYAN 149
Query: 453 HIISVANEIGRLPPTFLDA 509
I+ NEIGR PP+F DA
Sbjct: 150 SILLSGNEIGRAPPSFADA 168
Score = 84.6 bits (200), Expect = 7e-17
Identities = 41/58 (70%), Positives = 48/58 (82%)
Frame = +1
Query: 85 RNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYERL 258
R ATLK ISIRLKSVKNIQKIT+SMKMV+AAKY +AER+LK AR YG GA F++ +
Sbjct: 23 RGFATLKDISIRLKSVKNIQKITKSMKMVAAAKYAKAERELKGARAYGVGAKTFFDNI 80
Score = 52.8 bits (121), Expect = 3e-07
Identities = 22/38 (57%), Positives = 30/38 (78%)
Frame = +1
Query: 643 RHKLTAYDSLDSDVLQSYTEFSLASLLFYALKEGACSE 756
+ L+ YDS+D DVLQSY+E+SLA L++Y +KE A SE
Sbjct: 214 KEALSTYDSVDDDVLQSYSEYSLAQLIYYGMKESATSE 251
Score = 48.0 bits (109), Expect = 8e-06
Identities = 23/53 (43%), Positives = 35/53 (66%)
Frame = +2
Query: 485 SPTYFLGRSQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIES 643
+P F S A AIL SGY+F +G I++N+FK+VVSY S L + ++I++
Sbjct: 161 APPSFADASIAAKAILDSGYDFETGTILFNRFKTVVSYETSKLQILPLEAIKA 213
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = -3
Query: 491 WETSDLI-SNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFGYTSVY-SSAQT 318
W+T I T + V++ + + L +E + D+FG+T V+ +SA T
Sbjct: 71 WDTQQQIWEKTFGSMDVEASTSRIALTDNNYLIPALPDVSSEILFDYFGFTEVHKTSAST 130
Query: 317 SVRGHSNK 294
V HSNK
Sbjct: 131 LVAKHSNK 138
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = -3
Query: 491 WETSDLI-SNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFGYTSVY-SSAQT 318
W+T I T + V++ + + L +E + D+FG+T V+ +SA T
Sbjct: 71 WDTQQQIWEKTFGSMDVEASTSRIALTDNNYLIPALPDVSSEILFDYFGFTEVHKTSAST 130
Query: 317 SVRGHSNK 294
V HSNK
Sbjct: 131 LVAKHSNK 138
>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical protein
T04F3.1 protein.
Length = 3517
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = -3
Query: 506 VQESRWETSDLISNTNDVLSVQSLQDTARFISHTDHL-DVLSTRFAETVADHFGY 345
V +S DL +NT+ + S + T + T+ D S R T+ D FGY
Sbjct: 2425 VLKSSISLDDLFNNTSGIEKTTSEKTTTTTTTRTETTTDTYSKRSTSTLVDRFGY 2479
>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical protein
T04F3.1 protein.
Length = 3517
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = -3
Query: 506 VQESRWETSDLISNTNDVLSVQSLQDTARFISHTDHL-DVLSTRFAETVADHFGY 345
V +S DL +NT+ + S + T + T+ D S R T+ D FGY
Sbjct: 2425 VLKSSISLDDLFNNTSGIEKTTSEKTTTTTTTRTETTTDTYSKRSTSTLVDRFGY 2479
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,638,261
Number of Sequences: 27780
Number of extensions: 403837
Number of successful extensions: 1040
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -