Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0282.Seq
         (787 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    25   1.1  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    25   1.1  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   2.4  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   2.4  
S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor prot...    23   4.3  
AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    23   4.3  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   9.8  

>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 628 EVY*ERHKLTAYDSLDSDVLQSYTEFSLASLLFYALKEGACS 753
           EV+ E    T YD++D DV+ + TE  L + +   L +G C+
Sbjct: 17  EVFSEDKYTTKYDNVDIDVVLN-TERLLNAYVNCLLDQGPCT 57


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 628 EVY*ERHKLTAYDSLDSDVLQSYTEFSLASLLFYALKEGACS 753
           EV+ E    T YD++D DV+ + TE  L + +   L +G C+
Sbjct: 17  EVFSEDKYTTKYDNVDIDVVLN-TERLLNAYVNCLLDQGPCT 57


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
          protein.
          Length = 492

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 30 LRTGCRHPSRGGGLPSAKQ 86
          L + C  PSRG  +PS+++
Sbjct: 12 LLSSCTRPSRGNAVPSSQR 30


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
          protein.
          Length = 628

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 30 LRTGCRHPSRGGGLPSAKQ 86
          L + C  PSRG  +PS+++
Sbjct: 12 LLSSCTRPSRGNAVPSSQR 30


>S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor
           protein.
          Length = 85

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 451 STSLVLLMRSDVSHLLSWTQSVGHCHSHLRI 543
           S +L+L     +S    W +++G C SH+ I
Sbjct: 29  SYALILFNILHMSSAEGWFKAIGTCGSHIII 59


>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 36

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 457 MCFPYNLCRIPRDLSPTQITL 395
           M  PY++ ++P  LSP   T+
Sbjct: 1   MSSPYHVAQLPHHLSPNMPTM 21


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 568 NDFSGTKLVS*GENGSGQLTASKKVGG 488
           N   GTK+ +  +NGS Q+  S+   G
Sbjct: 395 NLVKGTKIDNWWDNGSNQIAFSRGCSG 421


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,313
Number of Sequences: 438
Number of extensions: 4744
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)