Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0282.Seq
(787 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast... 49 4e-06
At2g33040.1 68415.m04052 ATP synthase gamma chain, mitochondrial... 43 2e-04
At1g15700.1 68414.m01884 ATP synthase gamma chain 2, chloroplast... 43 3e-04
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel... 29 2.6
At1g04240.1 68414.m00415 auxin-responsive protein / indoleacetic... 29 2.6
At5g19130.2 68418.m02277 GPI transamidase component family prote... 29 3.5
At5g19130.1 68418.m02276 GPI transamidase component family prote... 29 3.5
At5g57890.1 68418.m07242 anthranilate synthase beta subunit, put... 28 6.1
At5g24550.1 68418.m02899 glycosyl hydrolase family 1 protein con... 28 6.1
At2g04400.1 68415.m00444 indole-3-glycerol phosphate synthase (I... 28 6.1
At1g53510.1 68414.m06068 mitogen-activated protein kinase, putat... 28 6.1
At1g25220.1 68414.m03130 anthranilate synthase beta subunit (ASB... 28 6.1
At1g25155.1 68414.m03123 anthranilate synthase beta subunit, put... 28 6.1
At1g25083.1 68414.m03118 anthranilate synthase beta subunit, put... 28 6.1
At1g24909.1 68414.m03112 anthranilate synthase beta subunit, put... 28 6.1
At1g24807.1 68414.m03108 anthranilate synthase beta subunit, put... 28 6.1
At4g14160.2 68417.m02186 transport protein, putative similar to ... 24 6.6
At4g14160.3 68417.m02185 transport protein, putative similar to ... 24 6.8
At4g14160.1 68417.m02184 transport protein, putative similar to ... 24 6.8
At4g02350.1 68417.m00319 exocyst complex subunit Sec15-like fami... 28 8.1
At3g60140.1 68416.m06715 glycosyl hydrolase family 1 protein con... 28 8.1
At3g15190.1 68416.m01920 chloroplast 30S ribosomal protein S20, ... 28 8.1
>At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast
(ATPC1) identical to SP|Q01908 ATP synthase gamma chain
1, chloroplast precursor (EC 3.6.3.14) {Arabidopsis
thaliana}
Length = 373
Score = 48.8 bits (111), Expect = 4e-06
Identities = 23/50 (46%), Positives = 35/50 (70%)
Frame = +1
Query: 94 ATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQ 243
A+L+ + R+ SVKN QKIT++MK+V+AAK RA+ + RP+ E V+
Sbjct: 51 ASLRELRDRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVE 100
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +3
Query: 285 KQLFVAMTSDRGLCGAVHTGVSKVIRNRLGEPGAENIK--VICVGDKSRG-ILQRLY 446
K V +T DRGLCG + + K R+ E ++ VI VG K L+R Y
Sbjct: 126 KVALVVVTGDRGLCGGFNNFIIKKAEARIKELKGLGLEYTVISVGKKGNSYFLRRPY 182
>At2g33040.1 68415.m04052 ATP synthase gamma chain, mitochondrial
(ATPC) identical to SP|Q96250 ATP synthase gamma chain,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; contains Pfam profile: PF00231 ATP synthase
Length = 325
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Frame = +3
Query: 267 PPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIR--NRLGEPGAENIKVICVGDKSRGILQR 440
P D K + V ++SD+GLCG +++ V KV R +L + ++ + VG+K++ I+ R
Sbjct: 98 PSIDVKKSVVVTLSSDKGLCGGINSTVVKVSRALYKLNAGPEKEVQFVIVGEKAKAIMFR 157
Query: 441 LYGKHIISVANEIGRLP 491
I+ E+ + P
Sbjct: 158 DSKNDIVLSVTELNKNP 174
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/33 (57%), Positives = 29/33 (87%)
Frame = +1
Query: 85 RNMATLKAISIRLKSVKNIQKITQSMKMVSAAK 183
R+++T + + R+KSVKNIQKIT++MKMV+A+K
Sbjct: 41 RSIST-QVVRNRMKSVKNIQKITKAMKMVAASK 72
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 679 DVLQSYTEFSLASLLFYALKEGACSE 756
++LQ+ EF + ++F A+ E ACSE
Sbjct: 248 EILQNLAEFQFSCVMFNAVLENACSE 273
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = +2
Query: 485 SPTYFLGRSQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIE 640
+P + S LA IL + EF + +I+YNKF SVV++ + + + + IE
Sbjct: 173 NPLNYAQVSVLADDILKN-VEFDALRIVYNKFHSVVAFLPTVSTVLSPEIIE 223
>At1g15700.1 68414.m01884 ATP synthase gamma chain 2, chloroplast
(ATPC2) identical to SP|Q01909 ATP synthase gamma chain
2, chloroplast precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; contains Pfam profile: PF00231 ATP synthase;
similar to ATP synthase gamma-subunit GI:21241 from
[Spinacia oleracea]
Length = 386
Score = 42.7 bits (96), Expect = 3e-04
Identities = 20/50 (40%), Positives = 34/50 (68%)
Frame = +1
Query: 94 ATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQ 243
A ++ + R+ SVKN QKIT++M++V+AA+ RA+ + RP+ E V+
Sbjct: 61 AGIRELRERIDSVKNTQKITEAMRLVAAARVRRAQDAVIKGRPFTETLVE 110
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 297 VAMTSDRGLCGAVHTGVSKVIRNRLGEPGAENIK--VICVGDKSRGILQR 440
V +T D+GLCG + V+K R+ E I VI VG K R
Sbjct: 140 VVVTGDKGLCGGFNNAVTKKATLRVQELKQRGIDCVVISVGKKGNAYFSR 189
>At2g45540.1 68415.m05663 WD-40 repeat family protein /
beige-related contains Pfam PF02138: Beige/BEACH domain;
contains Pfam PF00400: WD domain, G-beta repeat (3
copies)
Length = 2946
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -1
Query: 697 CRIGARRCPESRTQSACGALNRLLSVEGQVGLGVR 593
C + R CP++ A G L R V GQV + R
Sbjct: 635 CLLSGRFCPDASLSGAAGTLRRPAEVLGQVHVATR 669
>At1g04240.1 68414.m00415 auxin-responsive protein / indoleacetic
acid-induced protein 3 (IAA3) identical to SP|Q38822
Auxin-responsive protein IAA3 (Indoleacetic acid-induced
protein 3) {Arabidopsis thaliana}; EST gb|T04296 comes
from this gene
Length = 189
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Frame = +3
Query: 366 RLGEPGAENI-----KVICVGDKSRGILQRLYGKHIISVANEIGRLPPTFLDAVSWP 521
RLG PG +N+ +V C + ++ +L K I S + + PP V WP
Sbjct: 13 RLGLPGTDNVCEAKERVSCCNNNNKRVLSTDTEKEIESSSRKTETSPPRKAQIVGWP 69
>At5g19130.2 68418.m02277 GPI transamidase component family protein
/ Gaa1-like family protein contains Pfam profile:
PF04114 Gaa1-like, GPI transamidase component
Length = 696
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -1
Query: 472 LATLMMCFPYNLCRIPRDLSPTQITLMFSAPGSPRRLRITLDTPVCT 332
L ++ PY +C++P SPT ++M+ S L + P C+
Sbjct: 508 LGFIVTLLPYFICQVPGQHSPTNRSIMWGTTSSSLLLITFVTMPGCS 554
>At5g19130.1 68418.m02276 GPI transamidase component family protein
/ Gaa1-like family protein contains Pfam profile:
PF04114 Gaa1-like, GPI transamidase component
Length = 699
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -1
Query: 472 LATLMMCFPYNLCRIPRDLSPTQITLMFSAPGSPRRLRITLDTPVCT 332
L ++ PY +C++P SPT ++M+ S L + P C+
Sbjct: 511 LGFIVTLLPYFICQVPGQHSPTNRSIMWGTTSSSLLLITFVTMPGCS 557
>At5g57890.1 68418.m07242 anthranilate synthase beta subunit,
putative strong similarity to anthranilate synthase beta
chain GI:403434 [Arabidopsis thaliana]
Length = 273
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -1
Query: 397 LMFSAPGSPRRLRITLDTPVCTAPHKPLSEVIATNNCLGSSSGG 266
L+ PG+P+ I+L T + P PL V C+G + GG
Sbjct: 118 LISPGPGTPQDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFGG 161
>At5g24550.1 68418.m02899 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to anther-specific protein ATA27 (GI:2746341)
[Arabidopsis thaliana]
Length = 534
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -3
Query: 488 ETSDLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFGY 345
E S ++ N+ D + + TARF++H H+D+ RF T H Y
Sbjct: 327 EQSMMLQNSFDFIGINYY--TARFVAHDLHVDLSRPRF--TTDQHLQY 370
>At2g04400.1 68415.m00444 indole-3-glycerol phosphate synthase
(IGPS) nearly identical to SP|P49572
Length = 402
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -1
Query: 640 LNRLLSVEGQVGLGVRDHRLELVVNDFSGTKLVS*GENG 524
+ R+L +EG +G+ + LE D S TK + GE+G
Sbjct: 304 MGRVLGIEGIELVGINNRSLETFEVDISNTKKLLEGEHG 342
>At1g53510.1 68414.m06068 mitogen-activated protein kinase, putative
/ MAPK, putative (MPK18) mitogen-activated protein
kinase (MAPK)(AtMPK18), PMID:12119167
Length = 603
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/64 (26%), Positives = 32/64 (50%)
Frame = +3
Query: 351 KVIRNRLGEPGAENIKVICVGDKSRGILQRLYGKHIISVANEIGRLPPTFLDAVSWPLPF 530
++I + LG P +E I + DK+R L + K+ ++ + + + P L + L F
Sbjct: 229 ELITDLLGTPKSETISGVR-NDKARKYLTEMRKKNPVTFSQKFSKADPLALRLLQRLLAF 287
Query: 531 SPQD 542
P+D
Sbjct: 288 DPKD 291
>At1g25220.1 68414.m03130 anthranilate synthase beta subunit (ASB1)
identical to anthranilate synthase beta subunit
GI:403434 from [Arabidopsis thaliana]
Length = 276
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -1
Query: 397 LMFSAPGSPRRLRITLDTPVCTAPHKPLSEVIATNNCLGSSSGG 266
L+ PG+P+ I+L T + P PL V C+G + GG
Sbjct: 121 LISPGPGTPQDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFGG 164
>At1g25155.1 68414.m03123 anthranilate synthase beta subunit,
putative strong similarity to anthranilate synthase beta
subunit GI:403434 from (Arabidopsis thaliana)
Length = 222
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -1
Query: 397 LMFSAPGSPRRLRITLDTPVCTAPHKPLSEVIATNNCLGSSSGG 266
L+ PG+P+ I+L T + P PL V C+G + GG
Sbjct: 67 LISPGPGTPQDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFGG 110
>At1g25083.1 68414.m03118 anthranilate synthase beta subunit,
putative strong similarity to anthranilate synthase beta
subunit GI:403434 from (Arabidopsis thaliana); similar
to ESTs dbj|AV540153.1, dbj|AV557490.1, gb|AI997696.1,
gb|AW004516.1, dbj|AV521371.1
Length = 222
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -1
Query: 397 LMFSAPGSPRRLRITLDTPVCTAPHKPLSEVIATNNCLGSSSGG 266
L+ PG+P+ I+L T + P PL V C+G + GG
Sbjct: 67 LISPGPGTPQDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFGG 110
>At1g24909.1 68414.m03112 anthranilate synthase beta subunit,
putative strong similarity to anthranilate synthase beta
subunit GI:403434 from (Arabidopsis thaliana)
Length = 222
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -1
Query: 397 LMFSAPGSPRRLRITLDTPVCTAPHKPLSEVIATNNCLGSSSGG 266
L+ PG+P+ I+L T + P PL V C+G + GG
Sbjct: 67 LISPGPGTPQDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFGG 110
>At1g24807.1 68414.m03108 anthranilate synthase beta subunit,
putative similar to anthranilate synthase beta chain
GI:403434; similar to ESTs dbj|AV540153.1,
dbj|AV557490.1, gb|AI997696.1, gb|AW004516.1,
dbj|AV521371.1
Length = 235
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -1
Query: 397 LMFSAPGSPRRLRITLDTPVCTAPHKPLSEVIATNNCLGSSSGG 266
L+ PG+P+ I+L T + P PL V C+G + GG
Sbjct: 80 LISPGPGTPQDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFGG 123
>At4g14160.2 68417.m02186 transport protein, putative similar to
Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
sapiens]
Length = 772
Score = 24.2 bits (50), Expect(2) = 6.6
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +1
Query: 190 RAERDL-KAARPYGEGAVQFYERLRLHLL 273
R+ +DL K A PY + AV+FY+ + L+
Sbjct: 321 RSHKDLDKDAAPYYKKAVKFYDSIAKQLV 349
Score = 22.2 bits (45), Expect(2) = 6.6
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +1
Query: 19 MLGRFGPGVGTQVVAVVYHQPNRNMATL--KAISIRLKSVKNIQK 147
+LG PG G ++VA+V T+ K +S ++S K++ K
Sbjct: 284 LLGACLPGTGARIVALVGGPCTEGPGTIISKDLSDPVRSHKDLDK 328
>At4g14160.3 68417.m02185 transport protein, putative similar to
Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
sapiens]
Length = 620
Score = 24.2 bits (50), Expect(2) = 6.8
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +1
Query: 190 RAERDL-KAARPYGEGAVQFYERLRLHLL 273
R+ +DL K A PY + AV+FY+ + L+
Sbjct: 321 RSHKDLDKDAAPYYKKAVKFYDSIAKQLV 349
Score = 22.2 bits (45), Expect(2) = 6.8
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +1
Query: 19 MLGRFGPGVGTQVVAVVYHQPNRNMATL--KAISIRLKSVKNIQK 147
+LG PG G ++VA+V T+ K +S ++S K++ K
Sbjct: 284 LLGACLPGTGARIVALVGGPCTEGPGTIISKDLSDPVRSHKDLDK 328
>At4g14160.1 68417.m02184 transport protein, putative similar to
Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
sapiens]
Length = 621
Score = 24.2 bits (50), Expect(2) = 6.8
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +1
Query: 190 RAERDL-KAARPYGEGAVQFYERLRLHLL 273
R+ +DL K A PY + AV+FY+ + L+
Sbjct: 321 RSHKDLDKDAAPYYKKAVKFYDSIAKQLV 349
Score = 22.2 bits (45), Expect(2) = 6.8
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +1
Query: 19 MLGRFGPGVGTQVVAVVYHQPNRNMATL--KAISIRLKSVKNIQK 147
+LG PG G ++VA+V T+ K +S ++S K++ K
Sbjct: 284 LLGACLPGTGARIVALVGGPCTEGPGTIISKDLSDPVRSHKDLDK 328
>At4g02350.1 68417.m00319 exocyst complex subunit Sec15-like family
protein contains Pfam profile PF04091: Exocyst complex
subunit Sec15-like
Length = 771
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -3
Query: 419 FISHTDHLDVLSTRFAETVADHFGYTSVYSSAQTSVRGHSNKQLLG 282
F H HL + R AE HF T ++A+ ++ G K++ G
Sbjct: 536 FFRHAAHLSGVPLRMAERGRRHFPLTKSQNTAEDTLSGMLKKKIDG 581
>At3g60140.1 68416.m06715 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to Cyanogenic Beta-Glucosidase
(GI:1311386)(pdb:1CBG) [Trifolium Repens]; identical
beta-glucosidase GI:10834547
Length = 577
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 488 ETSDLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRF 375
E S ++ N++D + + TARF +H H+D RF
Sbjct: 321 EQSKMLQNSSDFVGINYY--TARFAAHLPHIDPEKPRF 356
>At3g15190.1 68416.m01920 chloroplast 30S ribosomal protein S20,
putative contains Pfam profile: PF01649 ribosomal
protein S20
Length = 202
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = +1
Query: 427 VSCKDCTESTSLVLLMRSDVSHLLSWTQSVGHCHSHLRIRVWFRKNHLQQVQVCGLLRPV 606
+SC + S S + +S LS++QSV C + +W +K ++Q+ VC P
Sbjct: 26 ISCSSPSSSFSNRRGASATLSSSLSFSQSVSQCVAFSTGNLWVQK-PMRQLIVCEAAAPT 84
Query: 607 RLA 615
+ A
Sbjct: 85 KKA 87
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,806,574
Number of Sequences: 28952
Number of extensions: 386256
Number of successful extensions: 1082
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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