Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0280.Seq
         (597 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    23   2.0  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   2.6  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   6.0  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   7.9  

>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 485 PASPIPVESFYR*HDRPRCISRESSWFQHFISFNR 589
           PA     +S +R +  P   S+ S W    ISF+R
Sbjct: 89  PAGHEEAQSPHRIYMHPESPSKGSHWMNQDISFSR 123


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 524 VTDKKTRLGSVMPAGFIGNSPKTL 453
           VTD  T+ G+ +P    G+SP  L
Sbjct: 706 VTDLSTKDGTTVPESNNGSSPSVL 729


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 7/30 (23%), Positives = 13/30 (43%)
 Frame = +3

Query: 357 HENWSFGFRDGSFYRSGYGRSETGARAAWE 446
           +E+W F    G+ +  G       + A W+
Sbjct: 162 YESWPFNTMSGATHHGGIKSDSVTSNAWWD 191


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = -1

Query: 156 RVLLRLFWSQY 124
           ++ ++LFW+QY
Sbjct: 386 KIAMKLFWAQY 396


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,144
Number of Sequences: 336
Number of extensions: 2776
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)