Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0280.Seq
         (597 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0355 - 12885898-12886290,12886351-12886644,12886744-128868...    28   4.9  
04_04_0337 - 24503417-24503523,24503612-24503715,24503828-245039...    28   6.5  
05_01_0384 + 2997465-2999777,2999960-3000035,3003027-3003102,300...    27   8.6  

>05_03_0355 -
           12885898-12886290,12886351-12886644,12886744-12886871,
           12886952-12888482
          Length = 781

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 8/77 (10%)
 Frame = +3

Query: 351 GAHENWSFGFRDG-SFYRSGYGRS-------ETGARAAWEARKGFR*IPYEASRHHRSQS 506
           G  E++ F F  G  F R G GR          GAR+    R GF   P  +  HH  +S
Sbjct: 410 GGGEDFHFRFHPGLGFNREGGGRGWMSQGFRPRGARSFGTRRGGFAGRPGRSGAHHAGRS 469

Query: 507 SLFIGDMIAQDVSLGKA 557
           +L        D   G+A
Sbjct: 470 NLPSYGQRVMDSGTGRA 486


>04_04_0337 -
           24503417-24503523,24503612-24503715,24503828-24503927,
           24504009-24504106,24504403-24504455,24504508-24504588,
           24504668-24504739,24504882-24504953,24505045-24505137,
           24505240-24505307,24505388-24505658
          Length = 372

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/70 (24%), Positives = 26/70 (37%)
 Frame = +1

Query: 286 YRAITYLKRPEVLFINGATDRMVPMKXXXXXXXXXXXXXXXXXEVKQEPVLLGKPGRVFG 465
           Y  +   + P  LFI    D +  +                    KQEP+++GKP     
Sbjct: 238 YGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAILGSTKQEPLVVGKPSTFMM 297

Query: 466 EFPMKPAGIT 495
           ++  K  GIT
Sbjct: 298 DYLAKKFGIT 307



 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 516 IGDMIAQDVSLGKAVGFNTLLVLTGTT 596
           +GD +  D+  G+  G  TLLVL+G T
Sbjct: 314 VGDRLDTDILFGQNGGCKTLLVLSGVT 340


>05_01_0384 +
           2997465-2999777,2999960-3000035,3003027-3003102,
           3003571-3004442,3004592-3004773,3005206-3005295,
           3005388-3005675,3005776-3005997,3006053-3006133,
           3006634-3006861
          Length = 1475

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 20/77 (25%), Positives = 35/77 (45%)
 Frame = -1

Query: 408 NQICKNSRP*TQKTSFHGHHPISRPIYEEDLRSFQVGYGSVHFRQVYLKVAAKTTAPISS 229
           NQ    + P  +K      + + +  Y+ DLR+ + G  +    +V L    +TTA +  
Sbjct: 326 NQDAAAAAPPVEKKENTYRNQLRKFFYKRDLRATRWGARARAVDKVMLVSGTRTTADV-- 383

Query: 228 SLLNTGCIRHSTPALDL 178
            L   G +R   P+L+L
Sbjct: 384 -LWQDGTLRRGVPSLEL 399


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,324,142
Number of Sequences: 37544
Number of extensions: 310068
Number of successful extensions: 716
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)