Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0280.Seq
         (597 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14135| Best HMM Match : rve (HMM E-Value=0.0016)                    28   5.0  
SB_35986| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_30603| Best HMM Match : PKD_channel (HMM E-Value=1.2e-15)           27   8.7  

>SB_14135| Best HMM Match : rve (HMM E-Value=0.0016)
          Length = 576

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -1

Query: 297 YGSVHFRQVYLKVAAKTTAPISSSLLNTGCIRHSTPAL 184
           + S  FR+V+  +A   TAPI  ++L   CIR + P L
Sbjct: 505 HSSQSFRRVFPSLAG--TAPILCAVLEGACIRRNKPQL 540


>SB_35986| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = -1

Query: 360 HGHHPISRPIYEEDLRSFQVGYGSVHFRQVYLKVAAKTTAPISSSLLNTGCIRHSTPALD 181
           HGH      +Y+E +  F  G+     R +  +V+ KT   ++   LN   + H     +
Sbjct: 34  HGHLKTRASLYQEGVVVFIRGHSPAFGRVIQRRVSMKTALVLAPGSLNDVRLIHGFIHDE 93

Query: 180 LDL 172
           LDL
Sbjct: 94  LDL 96


>SB_30603| Best HMM Match : PKD_channel (HMM E-Value=1.2e-15)
          Length = 1029

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 295 WLGTFSASLS*SGCKNDGSYLFIASKY 215
           W    S   S SGCKND  Y FI +++
Sbjct: 286 WREGDSEKWSSSGCKNDDRYYFICNRW 312


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,387,220
Number of Sequences: 59808
Number of extensions: 348775
Number of successful extensions: 781
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)