Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0280.Seq
         (597 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    25   1.9  
DQ139945-1|ABA29466.1|  399|Anopheles gambiae protein O-fucosylt...    24   3.2  
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    24   4.3  
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    24   4.3  
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    23   7.5  
M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.           23   9.9  
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    23   9.9  

>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1099

 Score = 25.0 bits (52), Expect = 1.9
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 10/41 (24%)
 Frame = -1

Query: 483  WLHREFTENPSWLPKQHG-LLFH---------FYRNQICKN 391
            W HR      SW  ++HG + FH         F+R+ +C+N
Sbjct: 893  WAHRVLPNIGSWQSRKHGDVSFHLCQVLSGHGFFRDYLCRN 933


>DQ139945-1|ABA29466.1|  399|Anopheles gambiae protein
           O-fucosyltransferase 1 protein.
          Length = 399

 Score = 24.2 bits (50), Expect = 3.2
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = -2

Query: 260 WLQKRRLLSLHRF*ILDVFAIVLRP*IWTFLAFESVCF*DSFGL--STGYTVNS 105
           + Q   L + HR   ++ F   L P +W      S C+ +  GL  STG+  N+
Sbjct: 79  YFQVGPLQAFHRVITMENFMKTLAPSLWPPAERISFCYTERMGLDGSTGHGCNA 132


>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1168

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 483 WLHREFTENPSWLPKQHGLLFHFYRNQI 400
           W HR+  +   W  ++HG +  FY +Q+
Sbjct: 904 WAHRQVPDVRLWTGRKHGEV-DFYLSQV 930


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1201

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
 Frame = -1

Query: 483  WLHREFTENPSWLPKQHG-LLFH 418
            W HR   +  SW  ++HG + FH
Sbjct: 968  WAHRVIPDVGSWQSRKHGDVTFH 990


>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1173

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -1

Query: 495  GDAGWLHREFTENPSWLPKQHGLLFHFYRNQI 400
            G   W HR   +  +W  ++HG + +F+ +QI
Sbjct: 908  GYVRWAHRLIPDIGAWQSRKHGEV-NFHLSQI 938


>M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.
          Length = 1212

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
 Frame = -1

Query: 483  WLHREFTENPSWLPKQHG-LLFH 418
            W HR   +  +W  ++HG + FH
Sbjct: 960  WTHRIIRDISAWQGRRHGEMTFH 982


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1222

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = -1

Query: 489 AGWLHREFTENPSWLPKQHGLL-FH 418
           A W HR   +   W+ ++HG + FH
Sbjct: 900 AVWAHRMIPDLHLWMSRRHGEVDFH 924


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 589,687
Number of Sequences: 2352
Number of extensions: 11459
Number of successful extensions: 24
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 57609459
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)