Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0280.Seq
         (597 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   1.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   2.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   4.0  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   9.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   9.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   9.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.2  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 107 CLLCNLY*DQKSLRSTRIQMQGR 175
           CLLC    DQK+L  + ++  G+
Sbjct: 64  CLLCQKAFDQKNLYQSHLRSHGK 86


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +3

Query: 168 KEGPDLGPEYYGEYIQYLEAM 230
           K G   GP  Y   +Q LEAM
Sbjct: 68  KGGASCGPNVYNRGVQRLEAM 88


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +3

Query: 390 SFYRSGYGRSETGARAAWEARKGFR*IPYEASRHHRSQ 503
           S   S  GRS   +   + +  GF    Y   +HH SQ
Sbjct: 288 SHLSSALGRSACHSPGVYPSTAGFLPPSYHPHQHHPSQ 325


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 137 KSLRSTRIQMQGRSRSRAGVLWRIHP 214
           K   S +  M+ R R +A   W IHP
Sbjct: 58  KLFGSKKALMKERIRQKAAGHWVIHP 83


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 137 KSLRSTRIQMQGRSRSRAGVLWRIHP 214
           K   S +  M+ R R +A   W IHP
Sbjct: 58  KLFGSKKALMKERIRQKAAGHWVIHP 83


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 137 KSLRSTRIQMQGRSRSRAGVLWRIHP 214
           K   S +  M+ R R +A   W IHP
Sbjct: 58  KLFGSKKALMKERIRQKAAGHWVIHP 83


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +1

Query: 265 KINLPKMYRAITYLKRPEVLFINGATD 345
           +IN  K+ R     KRP   F   ATD
Sbjct: 146 RINFTKLKRHHPRYKRPRTTFEPRATD 172


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,741
Number of Sequences: 438
Number of extensions: 3022
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)