Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0280.Seq
         (597 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47760.1 68418.m05900 phosphoglycolate phosphatase, putative ...    31   0.77 
At4g34300.1 68417.m04875 glycine-rich protein similar to auxin r...    30   1.3  
At4g33930.1 68417.m04815 glycine-rich protein hyphally regulated...    30   1.3  
At5g36790.1 68418.m04408 phosphoglycolate phosphatase, putative ...    28   5.4  
At5g36700.1 68418.m04392 phosphoglycolate phosphatase, putative ...    28   5.4  
At4g22590.1 68417.m03259 trehalose-6-phosphate phosphatase, puta...    28   5.4  
At1g03080.1 68414.m00282 kinase interacting family protein simil...    27   9.5  

>At5g47760.1 68418.m05900 phosphoglycolate phosphatase, putative
           similar to phosphoglycolate phosphatase precursor
           [Chlamydomonas reinhardtii] GI:15982558; contains
           InterPro accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 301

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 516 IGDMIAQDVSLGKAVGFNTLLVLTGTT 596
           +GD +  D+  G+  G  TLLVLTG T
Sbjct: 244 VGDRLDTDILFGQNAGCKTLLVLTGVT 270


>At4g34300.1 68417.m04875 glycine-rich protein similar to auxin
           response factor 30 (GI:20145855) {Arabidopsis thaliana}
          Length = 313

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 333 WGD**DGAHENWSFGFRDGSFYRSGYGRSETG 428
           WG   DG   NW +G   GS + SG G +  G
Sbjct: 68  WGWSSDGTDTNWGWGSSSGSNHSSGTGSTHNG 99


>At4g33930.1 68417.m04815 glycine-rich protein hyphally regulated
           protein, Candida albicans, PIR2:S58135
          Length = 343

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 333 WGD**DGAHENWSFGFRDGSFYRSGYGRSETG 428
           WG   DG   NW +G   GS + SG G +  G
Sbjct: 72  WGWSSDGTDTNWGWGSSSGSNHSSGTGSTHNG 103


>At5g36790.1 68418.m04408 phosphoglycolate phosphatase, putative
           similar to phosphoglycolate phosphatase precursor
           [Chlamydomonas reinhardtii] GI:15982558; contains
           InterPro accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 362

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 516 IGDMIAQDVSLGKAVGFNTLLVLTGTT 596
           +GD +  D+  G+  G  TLLVL+G T
Sbjct: 304 VGDRLDTDILFGQNGGCKTLLVLSGVT 330


>At5g36700.1 68418.m04392 phosphoglycolate phosphatase, putative
           similar to phosphoglycolate phosphatase precursor
           [Chlamydomonas reinhardtii] GI:15982558; contains
           InterPro accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 362

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 516 IGDMIAQDVSLGKAVGFNTLLVLTGTT 596
           +GD +  D+  G+  G  TLLVL+G T
Sbjct: 304 VGDRLDTDILFGQNGGCKTLLVLSGVT 330


>At4g22590.1 68417.m03259 trehalose-6-phosphate phosphatase,
           putative similar to trehalose-6-phosphate phosphatase
           (AtTPPA) GI:2944178; contains Pfam profile PF02358:
           Trehalose-phosphatase
          Length = 377

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -2

Query: 539 ILGDHVTD-KKTRLGSVMPAG-FIGNSPKTLP 450
           +L D  T   KTRLGS  P+G F+ NS K +P
Sbjct: 11  VLSDPTTPVSKTRLGSSFPSGRFMMNSRKKIP 42


>At1g03080.1 68414.m00282 kinase interacting family protein similar
           to kinase interacting protein 1 (GI:13936326) [Petunia
           integrifolia]
          Length = 1744

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 348 PISRPIYEEDLRSFQVGYGSVHFRQVYLKVA 256
           PI  P+Y +DLR    G  S H   V   +A
Sbjct: 134 PIRAPVYPDDLRKGAFGISSSHLSTVKRNIA 164


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,401,731
Number of Sequences: 28952
Number of extensions: 252293
Number of successful extensions: 585
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)