Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0276.Seq
(646 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 179 4e-46
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 107 1e-24
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 105 7e-24
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 101 9e-23
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 72 8e-14
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 68 1e-12
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 58 8e-10
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 42 6e-05
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 33 0.047
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.081
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.14
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 30 0.33
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.33
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 28 1.0
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 28 1.3
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 27 1.8
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 2.3
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 2.3
SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr 1|||M... 27 3.1
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.1
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc... 27 3.1
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 4.0
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 26 5.3
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 5.3
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos... 26 5.3
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 25 7.1
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 7.1
SPAC29A4.20 |||RNA polymerase II elongator complex, histone acet... 25 9.3
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha... 25 9.3
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 179 bits (435), Expect = 4e-46
Identities = 80/88 (90%), Positives = 84/88 (95%)
Frame = +1
Query: 253 HNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAI 432
+NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMTQI+FETFN PA YVAI
Sbjct: 77 NNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAI 136
Query: 433 QAVLSLYASGRTTGIVLDSGDGVSHTCP 516
QAVLSLYASGRTTGIVLDSGDGV+HT P
Sbjct: 137 QAVLSLYASGRTTGIVLDSGDGVTHTVP 164
Score = 156 bits (378), Expect = 3e-39
Identities = 70/75 (93%), Positives = 74/75 (98%)
Frame = +2
Query: 29 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 208
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 209 RGILTLKYPIEHGIV 253
RGILTLKYPIEHGIV
Sbjct: 62 RGILTLKYPIEHGIV 76
Score = 79.4 bits (187), Expect = 4e-16
Identities = 35/39 (89%), Positives = 38/39 (97%)
Frame = +3
Query: 510 VPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFT 626
VPIYEGYALPHAI+RLDLAGRDLTDYLMKIL ERGY+F+
Sbjct: 163 VPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTFS 201
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 107 bits (258), Expect = 1e-24
Identities = 45/87 (51%), Positives = 66/87 (75%)
Frame = +1
Query: 256 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ 435
++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM + MFE + +YVAIQ
Sbjct: 78 DFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQ 137
Query: 436 AVLSLYASGRTTGIVLDSGDGVSHTCP 516
AVLSLYA G ++G+V+DSGDGV+H P
Sbjct: 138 AVLSLYAQGLSSGVVVDSGDGVTHIVP 164
Score = 73.7 bits (173), Expect = 2e-14
Identities = 37/75 (49%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
Frame = +2
Query: 35 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSK 208
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 209 RGILTLKYPIEHGIV 253
R +L +KYP+E+GI+
Sbjct: 62 RSLLQVKYPMENGII 76
Score = 49.6 bits (113), Expect = 4e-07
Identities = 20/40 (50%), Positives = 28/40 (70%)
Frame = +3
Query: 510 VPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTK 629
VP+YE L H + RLD+AGRD T YL+ +L +GY+F +
Sbjct: 163 VPVYESVVLNHLVGRLDVAGRDATRYLISLLLRKGYAFNR 202
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 105 bits (251), Expect = 7e-24
Identities = 46/88 (52%), Positives = 64/88 (72%), Gaps = 1/88 (1%)
Frame = +1
Query: 256 NWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAI 432
NW DME+IW + + ++ L PEEHP+LLTE PL N+EK+ + +ET N PA+ ++
Sbjct: 82 NWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSL 141
Query: 433 QAVLSLYASGRTTGIVLDSGDGVSHTCP 516
Q VL+LYAS RTTGIVL+ GDG++H+ P
Sbjct: 142 QPVLALYASARTTGIVLECGDGLTHSVP 169
Score = 87.4 bits (207), Expect = 2e-18
Identities = 38/69 (55%), Positives = 51/69 (73%)
Frame = +2
Query: 47 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 226
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 227 KYPIEHGIV 253
+ PIE GI+
Sbjct: 72 QRPIERGII 80
Score = 43.2 bits (97), Expect = 3e-05
Identities = 17/41 (41%), Positives = 28/41 (68%)
Frame = +3
Query: 510 VPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTKN 632
VPIY+G+++P AI + ++ GRD+TDYL L + G+ +
Sbjct: 168 VPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKSGHELVSS 208
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 101 bits (242), Expect = 9e-23
Identities = 50/103 (48%), Positives = 63/103 (61%), Gaps = 8/103 (7%)
Frame = +1
Query: 232 PHRTRNRHNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 411
P R NWD ME+ W + + LR PE+H LLTE PLNP NRE +IMFE+FN
Sbjct: 93 PIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNC 152
Query: 412 PAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTCP 516
+Y+A+QAVL+L AS + TG V+DSGDGV+H P
Sbjct: 153 AGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIP 195
Score = 42.7 bits (96), Expect = 4e-05
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +2
Query: 47 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGDE 196
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58
Score = 34.3 bits (75), Expect = 0.015
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +3
Query: 510 VPIYEGYALPHAILRLDLAGRDLTDYLMKILTER 611
+P+ EGY + +I + LAGRD+T ++ +L +R
Sbjct: 194 IPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDR 227
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 71.7 bits (168), Expect = 8e-14
Identities = 36/97 (37%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Frame = +1
Query: 208 KRYPDPQIPHRTRNR--HNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 381
K P +I + RN NWD +W + +L+ P EHP+L+TE NP NR K
Sbjct: 58 KSNPGMEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKT 117
Query: 382 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSG 492
+ MFE+ PA Y+A Q + +ASG+ T ++D G
Sbjct: 118 LETMFESLRCPATYLAKQETCAAFASGKGTACLVDIG 154
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +2
Query: 32 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 133
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 67.7 bits (158), Expect = 1e-12
Identities = 33/89 (37%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Frame = +1
Query: 256 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ 435
NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE +N P++ I
Sbjct: 94 NWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNAPSVAYGID 152
Query: 436 AVLSLYASGR--TTGIVLDSGDGVSHTCP 516
+ S Y + + ++GIVL+ G+ SH P
Sbjct: 153 GLFSFYHNTKPSSSGIVLNLGNAASHVIP 181
Score = 36.7 bits (81), Expect = 0.003
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = +2
Query: 47 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 226
LV+DNGS +AG+ G+ P+ VF ++V R R + + + + VG++ + G ++
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDR----KLSRTSTLVGNDTLIEVGSRSI 82
Query: 227 -KYPIEHGIV 253
+ P E ++
Sbjct: 83 ARSPFERNVI 92
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 58.4 bits (135), Expect = 8e-10
Identities = 24/87 (27%), Positives = 48/87 (55%)
Frame = +1
Query: 256 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ 435
+W+ W +L+V P E+ +++TE NP++ R+++ + FE + PA Y+ Q
Sbjct: 79 DWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQ 138
Query: 436 AVLSLYASGRTTGIVLDSGDGVSHTCP 516
AV +A+ ++T +++D G + P
Sbjct: 139 AVCVAFANSKSTALIVDIGSDNASVTP 165
Score = 39.1 bits (87), Expect = 5e-04
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Frame = +2
Query: 32 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 211
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61
Query: 212 GI--LTLKYPIEHGIV----ITGMTWRR 277
I + +K +GI+ T TW R
Sbjct: 62 PIPGMEVKNGKSNGIIQDWESTLYTWER 89
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 42.3 bits (95), Expect = 6e-05
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Frame = +1
Query: 256 NWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFETFNTPAMY 423
+W+ ++ W H Y+ L P + +PV L +RE TQ FE P
Sbjct: 121 DWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFEECQVPGFT 179
Query: 424 VAIQAVLSLYASGRTTGIVLDSG 492
+A + ++ LYA G G+V+D G
Sbjct: 180 IAYEPLMGLYAIGILHGLVIDIG 202
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 32.7 bits (71), Expect = 0.047
Identities = 26/68 (38%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Frame = +2
Query: 401 HSTRPPCTSPSK-PCSRCTRPV-VPPV-SCWTPATV-SPTRAHLRRIRTPPRHPASGLSR 568
HS PP +P C RP VP V S W P ++ SP H + I PP P +
Sbjct: 135 HSHHPPLHNPLPVSCQPVLRPPPVPQVPSHWYPVSLPSPNLPH-QPISKPPVIPNLPKLQ 193
Query: 569 SRPHRLPH 592
P+RLPH
Sbjct: 194 VHPNRLPH 201
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.081
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +1
Query: 292 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 435
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 31.1 bits (67), Expect = 0.14
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 92 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 235
G+ PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 29.9 bits (64), Expect = 0.33
Identities = 11/37 (29%), Positives = 24/37 (64%)
Frame = +3
Query: 510 VPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYS 620
+P+ + A+ R+D+ G+ LT+YL ++++ R Y+
Sbjct: 171 IPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYN 207
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.33
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -2
Query: 189 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 28
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 28.3 bits (60), Expect = 1.0
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -3
Query: 200 VPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 111
+ L+ K+PS PY SRP A S TR
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -1
Query: 550 RMAWGSAYPS*MGTCGRHRRRSPARYRWYDR-TRTARAR 437
R +GS PS + H+ RSP R R DR +R++R+R
Sbjct: 123 RSDYGSRSPSPHSSVDSHQSRSPVRSRDRDRSSRSSRSR 161
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 27.5 bits (58), Expect = 1.8
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 152 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVITGM 265
+M+G +Y+G AQ KR +LT + I G VI G+
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI-IGYVILGL 201
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 2.3
Identities = 20/64 (31%), Positives = 23/64 (35%)
Frame = +2
Query: 410 RPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTRAHLRRIRTPPRHPASGLSRSRPHRLP 589
+PP S S+ S P PP A P + R TPP L S P LP
Sbjct: 375 QPPPLSSSRAVSN--PPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLP 432
Query: 590 HEDP 601
P
Sbjct: 433 PSAP 436
Score = 26.6 bits (56), Expect = 3.1
Identities = 20/71 (28%), Positives = 25/71 (35%)
Frame = +2
Query: 428 PSKPCSRCTRPVVPPVSCWTPATVSPTRAHLRRIRTPPRHPASGLSRSRPHRLPHEDPHR 607
P P R P PP S + P + R + PP P + RS P P + R
Sbjct: 352 PLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASR 411
Query: 608 ARLLVH*KPPS 640
PPS
Sbjct: 412 TSTPPVPTPPS 422
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 27.1 bits (57), Expect = 2.3
Identities = 23/60 (38%), Positives = 28/60 (46%)
Frame = -1
Query: 229 FEGQDTSFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGAIVYY 50
F G +F CLI++IR +SH D EHG II C T L G I+YY
Sbjct: 47 FAGLGIAFIYCLIAFIRE-MSHPSSR-------KDTMEHGL-PIILCST-LMLVGNILYY 96
>SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 274
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 573 RDRLSPDAGWRGGVRILRRWARVGDTV 493
RD S AGW GV++ R AR D +
Sbjct: 76 RDGDSQTAGWTRGVKVFREQARETDEI 102
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -2
Query: 192 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 76
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 26.6 bits (56), Expect = 3.1
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Frame = +3
Query: 462 SYHRYRAGLRRRCL---PHVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTKN 632
SY+ Y AG+ + P+ IY G P D D+ DY L Y+F N
Sbjct: 411 SYYPYYAGVEKDIFLKNPNGSIYIGAVWPGFTAFPDFTNPDVVDYWKDCLINLTYAFGSN 470
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 4.0
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 334 LLTEAPLNPKANREKMTQIMFETFN 408
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 25.8 bits (54), Expect = 5.3
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = +1
Query: 379 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTCPSTKDTHSPTP 546
+T +M P+M + ++ + G VL SGD V+ P+ D H P
Sbjct: 1794 VTSLMLVNSKHPSMSALCRFIIYKSVTMLQNGEVLKSGDYVTEFIPALLDMHVHIP 1849
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 5.3
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 229 FEGQDTSFALCLISYIRVLLSHTDHHA 149
+EG+DT+ +Y+R++L TD A
Sbjct: 74 YEGEDTTRITRFANYLRIILPGTDQKA 100
>SPBP35G2.05c |cki2||serine/threonine protein kinase
Cki2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 435
Score = 25.8 bits (54), Expect = 5.3
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = -3
Query: 596 LHEVVCEVATG*VQTQDGVGECVSFVDGHVWETPSPESSTIPVVRPDAY 450
L E+ +V T DGV + + DG WE+ S S + + R Y
Sbjct: 274 LQELFDDVLRANGDTNDGVYDWMLLNDGKGWESSSSHFSVVAMKRRKNY 322
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/36 (25%), Positives = 21/36 (58%)
Frame = +3
Query: 516 IYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 623
+ EG +P++ ++++ G D+T MK+L + +
Sbjct: 308 VEEGVVVPNSRIKINYGGDDITLLFMKLLMRSHFPY 343
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.4 bits (53), Expect = 7.1
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +3
Query: 348 SPQPQGQQREDDPDHVRNIQHARHVRRHPSRALAVRVRSYHRYRAGLRRR 497
+PQ + E++ D++R++ +RH RR P +A + R H + R R
Sbjct: 1428 TPQSRSFTNENN-DNLRSV--SRHTRREPQQAQNLNARREHESQKSDRWR 1474
>SPAC29A4.20 |||RNA polymerase II elongator complex, histone
acetyltransferase subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 544
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Frame = +2
Query: 518 LRRIRTPPRHPASGLS----RSRPHRLPH 592
+R++R P ASG++ +PHR PH
Sbjct: 70 MRKLRAKPVRTASGIAVVAVMCKPHRCPH 98
>SPAC57A10.02 |cdr2||GIN4 family protein kinase
Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/37 (27%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = -2
Query: 534 VRILRRWARVGDTVAGVQHD--TGGTTGRVQREHGLD 430
+ +LRRW +G +A + +D + + R++R++ L+
Sbjct: 654 LEVLRRWQLLGIGIADIIYDSVSASISARIKRQNSLN 690
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,962,753
Number of Sequences: 5004
Number of extensions: 68595
Number of successful extensions: 256
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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