Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0275.Seq
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c...    27   2.5  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    26   5.9  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    26   5.9  

>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 680

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 597 KRKTFDRYVRIIAELSLNPLRVSFK 671
           K +TFD Y  ++ E SL+PL +S K
Sbjct: 556 KNETFDIYKSVMNEASLDPLNMSRK 580


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -2

Query: 673  VLNDTRNGFRESSAIILTYRSKVFLLKFLIWTIKM 569
            + N +R G +  + ++LTY S      +L W +K+
Sbjct: 1590 MFNSSRPGNKNCNEMLLTYLSNALDENYLHWNVKL 1624


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 462 LHIYTGFVFILCILQKKKLYENSNN 536
           LH+Y G + I+ I + KK +  S+N
Sbjct: 130 LHVYQGLLTIIPIFKSKKRFMTSHN 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,869,334
Number of Sequences: 5004
Number of extensions: 61291
Number of successful extensions: 139
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)