Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0275.Seq
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30169| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_25826| Best HMM Match : Ank (HMM E-Value=6.7e-37)                   28   8.1  
SB_32537| Best HMM Match : Met_10 (HMM E-Value=8.4e-10)                28   8.1  

>SB_30169| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 104

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 209 FLGTRTNHNKVLSMPSNCAVYSVTFSHH 126
           +L   T HN  + +PSNCA Y    + H
Sbjct: 58  YLCQTTAHNTTMPLPSNCAQYDHALAQH 85


>SB_25826| Best HMM Match : Ank (HMM E-Value=6.7e-37)
          Length = 1041

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = +3

Query: 489 ILCILQKKKLYENSNNWHLIKIA 557
           I+ I ++++LY+N +NW L+ +A
Sbjct: 47  IIIICRRRRLYKNRSNWLLLSLA 69


>SB_32537| Best HMM Match : Met_10 (HMM E-Value=8.4e-10)
          Length = 397

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -3

Query: 216 GIFSGYKDK--SQQSFEHALKLCSV*CYIFT 130
           G+FSGY+DK  S  S    + L SV CY F+
Sbjct: 251 GLFSGYEDKFISSLSGSTLINLPSVHCYCFS 281


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,356,395
Number of Sequences: 59808
Number of extensions: 416184
Number of successful extensions: 704
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)