Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0275.Seq
         (686 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY052146-1|AAK93570.1| 1728|Drosophila melanogaster SD10541p pro...    32   0.85 
AF093637-1|AAC72365.1| 1750|Drosophila melanogaster SET domain b...    32   0.85 
AE014297-1382|AAF54700.3| 1993|Drosophila melanogaster CG6939-PA...    32   0.85 
AE014297-1381|AAN13531.2| 1973|Drosophila melanogaster CG6939-PB...    32   0.85 

>AY052146-1|AAK93570.1| 1728|Drosophila melanogaster SD10541p protein.
          Length = 1728

 Score = 31.9 bits (69), Expect = 0.85
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 300  FPLKIQTKKHPTYIAHIQHSTFRCVQNPHNKVTLF 404
            +PL I++++ P  +  I HS F  ++  HNK  +F
Sbjct: 1339 YPLDIRSQRAPAPLNRIGHSIFDYIERQHNKTPIF 1373


>AF093637-1|AAC72365.1| 1750|Drosophila melanogaster SET domain
            binding factor protein.
          Length = 1750

 Score = 31.9 bits (69), Expect = 0.85
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 300  FPLKIQTKKHPTYIAHIQHSTFRCVQNPHNKVTLF 404
            +PL I++++ P  +  I HS F  ++  HNK  +F
Sbjct: 1360 YPLDIRSQRAPAPLNRIGHSIFDYIERQHNKTPIF 1394


>AE014297-1382|AAF54700.3| 1993|Drosophila melanogaster CG6939-PA,
            isoform A protein.
          Length = 1993

 Score = 31.9 bits (69), Expect = 0.85
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 300  FPLKIQTKKHPTYIAHIQHSTFRCVQNPHNKVTLF 404
            +PL I++++ P  +  I HS F  ++  HNK  +F
Sbjct: 1604 YPLDIRSQRAPAPLNRIGHSIFDYIERQHNKTPIF 1638


>AE014297-1381|AAN13531.2| 1973|Drosophila melanogaster CG6939-PB,
            isoform B protein.
          Length = 1973

 Score = 31.9 bits (69), Expect = 0.85
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 300  FPLKIQTKKHPTYIAHIQHSTFRCVQNPHNKVTLF 404
            +PL I++++ P  +  I HS F  ++  HNK  +F
Sbjct: 1584 YPLDIRSQRAPAPLNRIGHSIFDYIERQHNKTPIF 1618


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,814,874
Number of Sequences: 53049
Number of extensions: 582813
Number of successful extensions: 1004
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 3013199100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)