Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0275.Seq
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81139-4|CAB03479.2|  358|Caenorhabditis elegans Hypothetical pr...    31   1.0  
U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu...    30   1.8  
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.      30   1.8  
AL032654-9|CAA21720.1|  404|Caenorhabditis elegans Hypothetical ...    29   4.1  
Z83233-11|CAB05757.2|  292|Caenorhabditis elegans Hypothetical p...    28   5.4  
Z81489-2|CAB04011.2|  360|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z81062-1|CAB02945.2|  365|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z99942-9|CAB17073.3|  675|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AY652945-1|AAT73712.1|  675|Caenorhabditis elegans guanylate cyc...    27   9.5  
AL132853-3|CAB60438.1|  859|Caenorhabditis elegans Hypothetical ...    27   9.5  
AL008867-4|CAD56232.2|  675|Caenorhabditis elegans Hypothetical ...    27   9.5  

>Z81139-4|CAB03479.2|  358|Caenorhabditis elegans Hypothetical
           protein W05H5.4 protein.
          Length = 358

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +1

Query: 451 IQFNYIFIPALFLYCVFYKKKNYMK--IPIIGI*LKLHLFKTFLWS 582
           I F  + + A   YCVFYK K++ K  + ++ I L LH F    W+
Sbjct: 32  IPFVTLPVYAEAFYCVFYKCKHFSKKYVVLLQIHLFLHFFGELYWT 77


>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
            guidance protein 2,isoform a protein.
          Length = 2886

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -1

Query: 386  VRILNTSESGMLYVCDVGRVFFSLDFQREIIKTLIVHY 273
            V+  N SE G+L VCD+ R   S+D+   +   L++H+
Sbjct: 1597 VQFFNKSEVGLLLVCDIIRTRCSVDWSESM--ALLLHF 1632


>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
          Length = 2914

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -1

Query: 386  VRILNTSESGMLYVCDVGRVFFSLDFQREIIKTLIVHY 273
            V+  N SE G+L VCD+ R   S+D+   +   L++H+
Sbjct: 1625 VQFFNKSEVGLLLVCDIIRTRCSVDWSESM--ALLLHF 1660


>AL032654-9|CAA21720.1|  404|Caenorhabditis elegans Hypothetical
           protein Y52B11A.9 protein.
          Length = 404

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = +3

Query: 414 NTFCTNQSFASLNTI*LHIYTGFVFILCILQKKKLYENSNNWHLIKIAFIQNIFMVQMRN 593
           N F  ++    +N+   H  TGFV  L    K K+ E    W+   IA+I    +++   
Sbjct: 96  NAFIKDKGHVHMNSTVWHSLTGFVQYLGSSGKCKIDEGDKGWY---IAYIDQEALIRKEE 152

Query: 594 FKRK 605
            +RK
Sbjct: 153 DQRK 156


>Z83233-11|CAB05757.2|  292|Caenorhabditis elegans Hypothetical
           protein K06B4.9 protein.
          Length = 292

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
 Frame = +3

Query: 300 FPLKIQTKKHPTYIAHIQHSTFRCVQNPHNKVTLFVFANTFCT-------NQSFASLNTI 458
           FPL+++      +I+H   +T   +    N   L +  N FC         Q F++ NT+
Sbjct: 62  FPLQVRYSPPMIHISHYVGNTCMTIYEISNLSHLLIALNRFCVLFFQHRYEQLFSNPNTV 121

Query: 459 *LHIYTGFVFILCILQKKKLYENS 530
              I   +++I CI+     YE S
Sbjct: 122 ---IMRNYLWITCIIFCAVCYEFS 142


>Z81489-2|CAB04011.2|  360|Caenorhabditis elegans Hypothetical
           protein C55A1.3 protein.
          Length = 360

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = -2

Query: 649 FRESSAIILTYRSKVFLLKFLIWTIKMF*INAILIKCQLLEFSYSFFFCKI 497
           F + SA ++T   ++ +L  +      F ++   +KC+LL+F  S  FC +
Sbjct: 65  FSKDSAFLITIEKRLAVLPDIAL---QFALSEFPVKCRLLKFEISVVFCSL 112


>Z81062-1|CAB02945.2|  365|Caenorhabditis elegans Hypothetical
           protein F15A4.1 protein.
          Length = 365

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 79  IFIHIQHNYRYLRPAV*CENV 141
           IFIHI  N+ YL P + C  +
Sbjct: 285 IFIHIMENFIYLNPVIICSTL 305


>Z99942-9|CAB17073.3|  675|Caenorhabditis elegans Hypothetical
           protein C46E1.2 protein.
          Length = 675

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 327 HPTYIAHIQHSTFRCVQNPHNKVTLFVF 410
           H  Y A+++  +FRC  NP   +TL  +
Sbjct: 110 HVVYKANLRGPSFRCEDNPDGTITLHYY 137


>AY652945-1|AAT73712.1|  675|Caenorhabditis elegans guanylate
           cyclase-like protein protein.
          Length = 675

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 327 HPTYIAHIQHSTFRCVQNPHNKVTLFVF 410
           H  Y A+++  +FRC  NP   +TL  +
Sbjct: 110 HVVYKANLRGPSFRCEDNPDGTITLHYY 137


>AL132853-3|CAB60438.1|  859|Caenorhabditis elegans Hypothetical
           protein Y80D3A.7 protein.
          Length = 859

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +3

Query: 291 FNYFPLKIQTKKHPTYIAHIQHSTFRCVQNPHNKVTLFVFANTF 422
           F Y  L       P Y   I++S   CV+N    +  F+F   F
Sbjct: 564 FTYSDLPAFLNSEPQYKPMIRYSESECVKNSEKCIESFIFTTGF 607


>AL008867-4|CAD56232.2|  675|Caenorhabditis elegans Hypothetical
           protein C46E1.2 protein.
          Length = 675

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 327 HPTYIAHIQHSTFRCVQNPHNKVTLFVF 410
           H  Y A+++  +FRC  NP   +TL  +
Sbjct: 110 HVVYKANLRGPSFRCEDNPDGTITLHYY 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,711,882
Number of Sequences: 27780
Number of extensions: 343833
Number of successful extensions: 830
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)