Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0275.Seq
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    25   0.89 
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    23   3.6  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   3.6  
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              22   4.8  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   6.3  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   8.3  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   8.3  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   8.3  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 7/33 (21%), Positives = 18/33 (54%)
 Frame = +1

Query: 22  KTLVLMYSPTQIILLMPYNIFIHIQHNYRYLRP 120
           K ++ +  P  + +++  N++I     YR+ +P
Sbjct: 88  KLVICLIDPRDVEIILSSNVYIDKSTEYRFFKP 120


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 319 LKNTLPTSHTYNIPLSDVFRI 381
           L  T PT     +PL DV++I
Sbjct: 179 LPPTRPTDKALRLPLQDVYKI 199


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 319 LKNTLPTSHTYNIPLSDVFRI 381
           L  T PT     +PL DV++I
Sbjct: 236 LPPTRPTDKALRLPLQDVYKI 256


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +3

Query: 483 VFILCILQKKKLYENSNNWHLIKIAFIQNIFM 578
           +F  C+++K   Y++  N++ + I  I  IF+
Sbjct: 61  LFSECLIKKFNGYDDGGNFNEVVIREIAEIFL 92


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 402 FVFANTFCTNQSFAS 446
           +VF   FC  QSFA+
Sbjct: 120 YVFGEAFCIIQSFAA 134


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +3

Query: 597 KRKTFDRYVRIIAELSLNPLRVSFKTSPYP 686
           K+K  +  ++I  E+ ++P R  F+    P
Sbjct: 149 KKKDIEEALKIREEIRVDPFRTGFEHKRQP 178


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +3

Query: 597 KRKTFDRYVRIIAELSLNPLRVSFKTSPYP 686
           K+K  +  ++I  E+ ++P R  F+    P
Sbjct: 149 KKKDIEEALKIREEIRVDPFRTGFEHKRQP 178


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 434 LVSTKRISKNKKCYFIVRILNT 369
           ++S KRI     C F+V++  T
Sbjct: 413 IMSEKRIMGEADCDFVVKLFKT 434


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,747
Number of Sequences: 438
Number of extensions: 4314
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)