Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0275.Seq
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18470.1 68417.m02738 negative regulator of systemic acquired...    30   1.3  
At3g50950.2 68416.m05579 disease resistance protein (CC-NBS-LRR ...    28   6.7  
At3g50950.1 68416.m05578 disease resistance protein (CC-NBS-LRR ...    28   6.7  
At3g18700.1 68416.m02375 hypothetical protein                          28   6.7  
At4g22650.1 68417.m03268 hypothetical protein various predicted ...    27   8.8  

>At4g18470.1 68417.m02738 negative regulator of systemic acquired
           resistance (SNI1) identical to negative regulator of
           systemic acquired resistance SNI1 [Arabidopsis thaliana]
           gi|5758933|gb|AAD50900
          Length = 432

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/73 (24%), Positives = 32/73 (43%)
 Frame = +3

Query: 447 LNTI*LHIYTGFVFILCILQKKKLYENSNNWHLIKIAFIQNIFMVQMRNFKRKTFDRYVR 626
           L  + L  Y   V  L    + ++YE + NW L+K +F+  +   +  NFK    D    
Sbjct: 164 LGNMFLFKYLAHVLKLDFTPRNQVYEETMNWSLLKESFLNLLLASRKVNFKLLMKDYLST 223

Query: 627 IIAELSLNPLRVS 665
           + A +  +   +S
Sbjct: 224 MCASIDADEKSIS 236


>At3g50950.2 68416.m05579 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 852

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 163 QIVQCIVLHFHIIPLAVDTCSCVECV*RYCKALIKLSV 50
           Q+  CIVL   ++ L +  C  +EC  +   +L+KL V
Sbjct: 625 QLQPCIVLFKKLLVLDMTNCGSLECFPKGIGSLVKLEV 662


>At3g50950.1 68416.m05578 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 852

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 163 QIVQCIVLHFHIIPLAVDTCSCVECV*RYCKALIKLSV 50
           Q+  CIVL   ++ L +  C  +EC  +   +L+KL V
Sbjct: 625 QLQPCIVLFKKLLVLDMTNCGSLECFPKGIGSLVKLEV 662


>At3g18700.1 68416.m02375 hypothetical protein
          Length = 174

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 528 SNNWHLIKIAFIQNIFMVQMRNFKRKTFDRY 620
           +NNW L+   F  ++ ++ +R F +   DRY
Sbjct: 14  NNNWFLLFNIFFSSLLVIALRFFDQDVSDRY 44


>At4g22650.1 68417.m03268 hypothetical protein various predicted
           proteins, Arabidopsis thaliana
          Length = 156

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 613 SKVFLLKFLIWTIKMF*INAILIKCQLLEFSYSFFFC 503
           S VFLL  L+W I+ +  N ++  C LL     F++C
Sbjct: 119 SLVFLLD-LLWFIRSYSFNLVIDFCMLLCSCTYFYYC 154


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,038,339
Number of Sequences: 28952
Number of extensions: 282814
Number of successful extensions: 497
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)