Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0274.Seq
         (550 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    42   3e-06
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    42   3e-06
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   1.8  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    23   1.8  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    23   1.8  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   2.3  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   3.1  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   4.1  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   9.4  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   9.4  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    21   9.4  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   9.4  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   9.4  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   9.4  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 42.3 bits (95), Expect = 3e-06
 Identities = 20/55 (36%), Positives = 29/55 (52%)
 Frame = -1

Query: 217 GFKQRLALACSLMHEPDILFLDEPTSGVDPITRREFWLHINSMVEKGVTVMVTTH 53
           G K+RL+ A  ++  P ++F DEPTSG+D          +  M   G TV+ T H
Sbjct: 223 GEKKRLSFAAEVLTNPKLMFCDEPTSGLDSFMALTVMQVLKEMAMTGKTVICTIH 277


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 42.3 bits (95), Expect = 3e-06
 Identities = 20/55 (36%), Positives = 29/55 (52%)
 Frame = -1

Query: 217 GFKQRLALACSLMHEPDILFLDEPTSGVDPITRREFWLHINSMVEKGVTVMVTTH 53
           G K+RL+ A  ++  P ++F DEPTSG+D          +  M   G TV+ T H
Sbjct: 223 GEKKRLSFAAEVLTNPKLMFCDEPTSGLDSFMALTVMQVLKEMAMTGKTVICTIH 277


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 192 ASASRCLKPNGSSSVAWEAILSGRT 266
           AS S CL  N SS ++   + +GRT
Sbjct: 234 ASRSSCLGSNTSSMLSLNCLNTGRT 258


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 192 ASASRCLKPNGSSSVAWEAILSGRT 266
           AS S CL  N SS ++   + +GRT
Sbjct: 23  ASRSSCLGSNTSSMLSLNCLNTGRT 47


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 192 ASASRCLKPNGSSSVAWEAILSGRT 266
           AS S CL  N SS ++   + +GRT
Sbjct: 23  ASRSSCLGSNTSSMLSLNCLNTGRT 47


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 276 CGRFFRSAPDRVSHTHQRKSVNSV 347
           CG+ FRS  +  SH  Q +   ++
Sbjct: 484 CGQSFRSLAEMTSHMQQTQHYTNI 507


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +1

Query: 133 QRRKSVRRETECPVHASANRPAPAAV 210
           QRR + R   +CP    A R  PA V
Sbjct: 282 QRRYTGRATCDCPNCQEAERLGPAGV 307


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = +3

Query: 186 EQASASRCLKPNGSSSVAWEAILSGRTPRSCGR 284
           E    S   KP      A   ILSGR   SC +
Sbjct: 171 ENVKKSGYTKPTAIQKYAIPVILSGRDLMSCAQ 203


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -2

Query: 471 LVPTSGPGAGAGDG 430
           L P + PG G G G
Sbjct: 384 LTPLASPGCGPGQG 397


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 160 FLDEPTSGVDPITRR 116
           + D P+SG  P TRR
Sbjct: 199 YSDRPSSGRSPRTRR 213


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 199 ALACSLMHEPDILFLDEPT 143
           A + +L+H PD   LD P+
Sbjct: 126 AFSVALLHRPDTQNLDLPS 144


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -2

Query: 471 LVPTSGPGAGAGDG 430
           L P + PG G G G
Sbjct: 384 LTPLASPGCGPGQG 397


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 65  HHRDAFLYHAVDVQ 106
           H RDAFL    D Q
Sbjct: 268 HRRDAFLKEVADFQ 281


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 65  HHRDAFLYHAVDVQ 106
           H RDAFL    D Q
Sbjct: 268 HRRDAFLKEVADFQ 281


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,212
Number of Sequences: 336
Number of extensions: 3287
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)