Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0274.Seq
         (550 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    28   0.072
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   1.2  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   2.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   8.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.2  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    21   8.2  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 27.9 bits (59), Expect = 0.072
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +2

Query: 344 CSTVSYRRAKIFAPYSRDAGALYRNSLSD---PSPAPAPGPEVGTSKPH 481
           C   S  + KI    SR     + +S+ D   PS + +P P + TS+PH
Sbjct: 6   CDRKSLSQRKIIRSRSRRYSKRFSSSIVDRRSPSSSRSPSPSLLTSQPH 54


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 419 SLSDPSPAPAPGPEVGTSK 475
           +LS  SP+P+P P VG  K
Sbjct: 876 NLSKKSPSPSPRPLVGPCK 894


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 435 PQHQRLGRKSAPANRTSS*RWSIYPAV 515
           PQH      ++PA RT+S   S+YP V
Sbjct: 69  PQHSGSSASTSPAARTTS---SMYPYV 92


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 13/51 (25%), Positives = 18/51 (35%)
 Frame = +2

Query: 305 PRKPYTPEKKRKFCSTVSYRRAKIFAPYSRDAGALYRNSLSDPSPAPAPGP 457
           P KP  P          S +  KIF   +++   L        +  P PGP
Sbjct: 338 PPKPAPPPPPPSSSGPDSAKLDKIFDIATKENAMLLSGRSQKSTTGPPPGP 388


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +1

Query: 469 QQTAHHLKGGRFTPP 513
           Q TA    GGRF PP
Sbjct: 380 QATAELKLGGRFEPP 394


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 18/73 (24%), Positives = 29/73 (39%)
 Frame = +3

Query: 315 HTHQRKSVNSVRPSVTVERKFLRHIAEMLARFTGTLFQIHPQHQRLGRKSAPANRTSS*R 494
           H H+R++    R  +  +RKF   +    A       +IH    R G K   A R  +  
Sbjct: 7   HWHKRRATGGKRKPIRKKRKF--ELGRPAANTKLGPQRIHTVRTRGGNKKYRALRLDTGN 64

Query: 495 WSIYPAVWPKKTK 533
           +S       +KT+
Sbjct: 65  FSWGSECTTRKTR 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,433
Number of Sequences: 438
Number of extensions: 3915
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)