Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0273X.Seq
         (526 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.17c |||FUN14 family protein|Schizosaccharomyces pombe|c...    27   2.3  
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    25   6.9  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    25   9.1  
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo...    25   9.1  
SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces po...    25   9.1  
SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation...    25   9.1  
SPAP27G11.07c |||serine/threonine protein kinase |Schizosaccharo...    25   9.1  

>SPAC29A4.17c |||FUN14 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 147

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 350 PSCRAVSTQNGFLSLRSWPGTRPPHRPSLFPAQSV 246
           PS    +TQ+ F ++R+W  T P  + S F A  V
Sbjct: 108 PSSGRFNTQSTFPTIRNWICTNPNFKLSFFSAMYV 142


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -2

Query: 396 YTLICLSTAATLFRRTVMSCSF 331
           YT +CLS A  LFR    S SF
Sbjct: 538 YTAVCLSAALLLFRIAKPSGSF 559


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 481 QVAHPARKRHTIEQSLTTCSL 419
           ++AHP    H + QSL +C L
Sbjct: 188 EIAHPPSYDHRLHQSLLSCFL 208


>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 20/53 (37%), Positives = 29/53 (54%)
 Frame = +3

Query: 6   MSVRFVRTILVLLAIVHNSRALVAEVVDVLKLGKEIGEEIIASWNVVGKTLNV 164
           +S RF+R I +LL+ V  SRA   ++VDV        E+I   W  V  TL++
Sbjct: 42  VSSRFMRLIELLLSKVDRSRA--EDIVDV--------EDIDNRWAEVSDTLDI 84


>SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 412

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 11/61 (18%), Positives = 31/61 (50%)
 Frame = -1

Query: 469 PARKRHTIEQSLTTCSLQFRLKADVHSHLSVHCRHFVQKDRHVVQFQLKTGSSPSVLGQE 290
           P++  +   +++T   ++  L + +  HL+   R+F +K + +++ +    S  + L  +
Sbjct: 2   PSQGNNKNSENITQNPIEGELGSVIVEHLTKRIRNFTKKKQKILKLEEIAASDSNSLNDD 61

Query: 289 Q 287
           Q
Sbjct: 62  Q 62


>SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation
           factor eIF2 beta subunit|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 321

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 328 VETARHDGPSEQSGGSGQTDESVRRPSS 411
           V+    DGP   S G+   D+S R+ S+
Sbjct: 34  VDAVSKDGPEASSAGATDEDDSERKSSA 61


>SPAP27G11.07c |||serine/threonine protein kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 238

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = -1

Query: 517 GGTCARVCAPARQVAHPARKRHTIEQSLTTCSLQFRLKADVHSHLSVHC--RHFVQKDR 347
           G  C   C PA++  HP   +   + S   C ++ RL A  H ++ + C   +F+  +R
Sbjct: 42  GEVCLLKCRPAKRWRHPILDQ---KLSRKRCLVEARLLAKCH-YVGIKCPMLYFIDANR 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,103,394
Number of Sequences: 5004
Number of extensions: 41311
Number of successful extensions: 128
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)