Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0273X.Seq
(526 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0695 + 5251802-5253016 31 0.57
06_01_1050 + 8262033-8262165,8262262-8262391,8262486-8263026 30 0.99
04_03_0980 + 21406822-21409496,21410322-21410376 30 1.3
11_01_0113 + 881806-881996,882831-882921,883140-883255,884489-88... 29 2.3
03_06_0605 + 35024493-35025152,35025425-35025710,35026249-35026262 29 3.0
07_03_0941 - 22763733-22763970,22764077-22764213,22764282-227644... 28 4.0
09_06_0140 + 21090686-21091645,21092142-21092221,21092705-210929... 28 5.3
02_05_0008 + 24934917-24935229,24936387-24936608,24936876-249375... 28 5.3
02_03_0235 - 16702768-16702956,16703956-16704492,16705084-167052... 28 5.3
03_02_0124 - 5749183-5749773,5750628-5751160,5751191-5753035,575... 27 7.0
02_05_0452 + 29127686-29128078,29128155-29128242,29129287-291294... 27 7.0
02_04_0475 + 23229046-23229480,23230062-23231205,23232187-232323... 27 7.0
05_01_0400 - 3159370-3159385,3159599-3159703,3159972-3160006,316... 27 9.2
01_01_0535 + 3923433-3923932,3924105-3925098 27 9.2
01_01_0533 + 3917101-3917603,3918312-3919305 27 9.2
>07_01_0695 + 5251802-5253016
Length = 404
Score = 31.1 bits (67), Expect = 0.57
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = +3
Query: 450 VCLLRAGCATWRAGAHTRAHVPPH 521
VC LRA C +WRA A RA V H
Sbjct: 41 VCRLRAVCRSWRAVASDRAFVDAH 64
>06_01_1050 + 8262033-8262165,8262262-8262391,8262486-8263026
Length = 267
Score = 30.3 bits (65), Expect = 0.99
Identities = 12/49 (24%), Positives = 22/49 (44%)
Frame = -3
Query: 440 KPNNVFAPIPLEGRRTLSSVCPLPPLCSEGPSCRAVSTQNGFLSLRSWP 294
+P+ + AP P +S C + P PSC + ++ + + WP
Sbjct: 168 EPHEITAPPPAAAAEAATSNCSVSPASVLSPSCSSSASAASAVDVAEWP 216
>04_03_0980 + 21406822-21409496,21410322-21410376
Length = 909
Score = 29.9 bits (64), Expect = 1.3
Identities = 20/62 (32%), Positives = 26/62 (41%)
Frame = -3
Query: 374 LPPLCSEGPSCRAVSTQNGFLSLRSWPGTRPPHRPSLFPAQSVDRLRYMRELCQY*SFTS 195
LP + ++GP AV + W G H PSLF Q+ RY R+ S S
Sbjct: 836 LPAVAADGPK-PAVEIEKDVWDALEWDGVEADHHPSLF--QAPVHSRYYRKKLPRGSVLS 892
Query: 194 SD 189
D
Sbjct: 893 GD 894
>11_01_0113 +
881806-881996,882831-882921,883140-883255,884489-885260
Length = 389
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 234 SQSIDRLSWE*RRPVRWPCSWPRTEGEEPVL 326
++S + W RRP R PC W +GEE VL
Sbjct: 30 TRSAPSILWRRRRP-RSPCPWSVEKGEEVVL 59
>03_06_0605 + 35024493-35025152,35025425-35025710,35026249-35026262
Length = 319
Score = 28.7 bits (61), Expect = 3.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 437 ALLNRVSFTSWMRYLACWSTYTRT 508
+LL R+SF +WM ++ W T++ T
Sbjct: 157 SLLGRMSFLAWMIFVPLWLTFSYT 180
>07_03_0941 -
22763733-22763970,22764077-22764213,22764282-22764470,
22765238-22765756,22766319-22767357,22767665-22767759,
22768253-22768357
Length = 773
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = -3
Query: 458 KTHD*AKPNNVFAPIPLEGRRTLSSVCPLPPLCSEG 351
K D AK +++ P P EG R SSV P L S G
Sbjct: 370 KIVDSAKNDDILLPSPQEGSRLSSSVAPNIMLTSSG 405
>09_06_0140 +
21090686-21091645,21092142-21092221,21092705-21092906,
21093052-21093327,21093414-21093482,21093638-21093785,
21094080-21094228,21094897-21095061,21095623-21095732,
21095868-21095946,21095947-21096240
Length = 843
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +3
Query: 417 WSEHVVRLCSIVCLLRAGCATWRAGAHTRAH 509
+SEHV R C C CAT R H R H
Sbjct: 41 FSEHV-RRCFAACKPPTSCATARQPRHARGH 70
>02_05_0008 +
24934917-24935229,24936387-24936608,24936876-24937591,
24937646-24937728,24938448-24938514,24938833-24939228,
24939276-24939318,24939380-24939474,24940287-24940314,
24940636-24940754
Length = 693
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = -1
Query: 484 RQVAHPARKRHTIEQSLT---TCSLQFRLKADVHSHLSVHCRHFVQKDRHVVQ 335
++V H + K H ++ + + L +L A+VHSH+ H V R+++Q
Sbjct: 584 QRVPHASSKDHNLKSKVLKDGSNELCSKLTAEVHSHIQDHGGSLVGPSRYLLQ 636
>02_03_0235 -
16702768-16702956,16703956-16704492,16705084-16705233,
16705310-16705625,16707005-16707286,16707895-16707971,
16708121-16708186,16708700-16709246,16709435-16709565,
16709642-16709746,16709859-16710039,16710123-16710185,
16711000-16711109,16711576-16711638,16711859-16712191
Length = 1049
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 302 SWPGTRPPHRPSLFPAQSVDRLRYMRELCQ 213
+WPG R R F + R R +RELC+
Sbjct: 57 AWPGDRRRQRERAFREEFERRRRQLRELCR 86
>03_02_0124 -
5749183-5749773,5750628-5751160,5751191-5753035,
5753632-5753820,5753911-5754013,5754087-5754269,
5754392-5754484,5755031-5755219,5756133-5756327
Length = 1306
Score = 27.5 bits (58), Expect = 7.0
Identities = 18/70 (25%), Positives = 33/70 (47%)
Frame = -1
Query: 448 IEQSLTTCSLQFRLKADVHSHLSVHCRHFVQKDRHVVQFQLKTGSSPSVLGQEQGHRTGL 269
+E++ + S+Q V + L V+ R+ + R + PSV G +G RTG+
Sbjct: 466 LERNSSDGSMQNERNKTVPNSLFVNDRNGQNRSRFARTRSSPELTDPSVEGYSRGRRTGV 525
Query: 268 LYSQLNLSID 239
+ +L +D
Sbjct: 526 VEMDKSLKVD 535
>02_05_0452 +
29127686-29128078,29128155-29128242,29129287-29129419,
29129506-29130178
Length = 428
Score = 27.5 bits (58), Expect = 7.0
Identities = 23/72 (31%), Positives = 32/72 (44%)
Frame = -1
Query: 508 CARVCAPARQVAHPARKRHTIEQSLTTCSLQFRLKADVHSHLSVHCRHFVQKDRHVVQFQ 329
CA VC R+V K T+E+ + LK V C FV++DR +
Sbjct: 99 CAAVCRSWREVTKEVVK--TLEEC-GRITFPISLKQPGPREHPVQC--FVRRDRATSTYL 153
Query: 328 LKTGSSPSVLGQ 293
L G SPS+ G+
Sbjct: 154 LYLGLSPSLHGE 165
>02_04_0475 +
23229046-23229480,23230062-23231205,23232187-23232334,
23232776-23234225
Length = 1058
Score = 27.5 bits (58), Expect = 7.0
Identities = 14/28 (50%), Positives = 21/28 (75%), Gaps = 2/28 (7%)
Frame = +3
Query: 66 ALVAEVV-DVL-KLGKEIGEEIIASWNV 143
ALV+ V+ +VL KLG +GE+I+ WN+
Sbjct: 60 ALVSAVLKEVLGKLGSAVGEQIVMRWNL 87
>05_01_0400 -
3159370-3159385,3159599-3159703,3159972-3160006,
3160134-3160272,3160457-3160605,3161052-3161173,
3161296-3161417,3161779-3162033,3162108-3162271,
3162311-3162489,3162593-3162767,3162916-3163002,
3163144-3163446,3163539-3163594,3163813-3163894,
3163972-3164039,3164779-3164835,3164926-3164991,
3165121-3165192,3167363-3167459
Length = 782
Score = 27.1 bits (57), Expect = 9.2
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 30 ILVLLAIVHNSRALVAEVVDVLKLGKEIGEEIIASWNVVGKTLN 161
++ LL IV ++ VVD+L +GK+I + + N G +N
Sbjct: 473 VMPLLEIVRSNHTSPQVVVDLLDVGKKIKKTPVVVGNCTGFAVN 516
>01_01_0535 + 3923433-3923932,3924105-3925098
Length = 497
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 81 VVDVLKLGKEIGEEIIASWNVVGKTLNVS 167
VV++LK+G EIG + +A W K + V+
Sbjct: 408 VVNLLKIGLEIGVKGVAQWGSEHKEVRVT 436
>01_01_0533 + 3917101-3917603,3918312-3919305
Length = 498
Score = 27.1 bits (57), Expect = 9.2
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +3
Query: 54 HNSRALVAE--VVDVLKLGKEIGEEIIASWNVVGKTLNVS 167
H S V E VVD LK+G E+G + + W K + V+
Sbjct: 398 HCSEQFVNEKLVVDHLKIGVEVGVKGVTQWGTEQKEVKVT 437
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,949,186
Number of Sequences: 37544
Number of extensions: 314997
Number of successful extensions: 1121
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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