Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0273X.Seq
         (526 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3725| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.3  
SB_19938| Best HMM Match : TolA (HMM E-Value=0.22)                     28   4.1  
SB_26711| Best HMM Match : I-set (HMM E-Value=0)                       28   4.1  
SB_29933| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     27   7.2  
SB_22532| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_26916| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_51487| Best HMM Match : wnt (HMM E-Value=1.1e-08)                   27   9.5  
SB_45129| Best HMM Match : wnt (HMM E-Value=8.1e-06)                   27   9.5  
SB_38182| Best HMM Match : wnt (HMM E-Value=0)                         27   9.5  
SB_32204| Best HMM Match : wnt (HMM E-Value=8.2e-31)                   27   9.5  
SB_22258| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_15165| Best HMM Match : wnt (HMM E-Value=6e-28)                     27   9.5  
SB_14585| Best HMM Match : wnt (HMM E-Value=9.3e-17)                   27   9.5  

>SB_3725| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1126

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = -1

Query: 298 GQEQGHRTGLLYSQLNLSIDCDICESCASINLSRLL--IRG 182
           G E+G +  + +S L    +C++C+ CA +N  RLL  +RG
Sbjct: 664 GGEEGEQVSVKFSPLLYRENCELCQPCA-VNDERLLQGVRG 703


>SB_19938| Best HMM Match : TolA (HMM E-Value=0.22)
          Length = 2279

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -1

Query: 343 VVQFQLKTGSSPSVLGQEQGHRTGLLYSQLNL 248
           V QFQ KTG+SPS+   ++     L+ +++N+
Sbjct: 840 VHQFQEKTGASPSIASTDRQESDALVTTEVNV 871


>SB_26711| Best HMM Match : I-set (HMM E-Value=0)
          Length = 327

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/56 (33%), Positives = 29/56 (51%)
 Frame = +2

Query: 254 ELGIEKAGAVALFLAKNGGRGTRFELKLHDMTVLLNKVAAVDRQMRVYVGLQAELE 421
           ELG   + A  L   +  G G RFE +L D+ V + + A+     +V V L AE++
Sbjct: 86  ELGSALSTAEVLVNEREKGEGPRFEERLRDVRVEIGREAS----FKVRVSLPAEVD 137


>SB_29933| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 420

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
 Frame = -1

Query: 427 CSLQFRLKADVHSHLSVHCRHFVQKDRHVVQFQLKTGSSPSVLGQEQGHRTGLLYSQLNL 248
           C   F  KA + +HL +H R       +V+    K       L ++    T L+      
Sbjct: 236 CGKCFTRKAHLKTHLMIHSRE-EPYCTNVMNKPYKCDVCGKCLTRKANLNTHLMIHTGQK 294

Query: 247 SIDCDICESC--ASINLSRLLI 188
             +CD C  C   S+NL R L+
Sbjct: 295 PYECDKCGKCFSESVNLKRHLM 316


>SB_22532| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 698

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -1

Query: 475 AHPARKRHTIEQSLTTCSLQFRLKADVHSHLSVHCRHFVQKDR 347
           A P++   + +   T CSL F+  + +  H + H + F QKD+
Sbjct: 406 AKPSKMEFS-DHKCTHCSLAFKDSSSLAKHNAWHAKTFKQKDK 447


>SB_26916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1732

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
 Frame = -3

Query: 437 PNNVFAPIPLEGRRTLSS---VCPLPPLCSEGPSCRAVSTQNGFLSLRSWPGTRP 282
           P  +  P+   G+    S     P PP C+  P  R  +T  GF  L     TRP
Sbjct: 25  PQVIIRPVTAPGKHINKSSKPFTPSPPRCTPSPLPRRPNTTVGFYELPISTYTRP 79


>SB_51487| Best HMM Match : wnt (HMM E-Value=1.1e-08)
          Length = 186

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 437 PNNVFAPIPLEGRRTLSSVCPLPPLC 360
           P+ VFAP+  + RR+L  + P P  C
Sbjct: 87  PSRVFAPLTKKARRSLVFLKPSPDYC 112


>SB_45129| Best HMM Match : wnt (HMM E-Value=8.1e-06)
          Length = 125

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 437 PNNVFAPIPLEGRRTLSSVCPLPPLC 360
           P+ VFAP+  + RR+L  + P P  C
Sbjct: 26  PSRVFAPLTKKARRSLVFLKPSPDYC 51


>SB_38182| Best HMM Match : wnt (HMM E-Value=0)
          Length = 289

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 437 PNNVFAPIPLEGRRTLSSVCPLPPLC 360
           P+ VFAP+  + RR+L  + P P  C
Sbjct: 190 PSRVFAPLTKKARRSLVFLKPSPDYC 215


>SB_32204| Best HMM Match : wnt (HMM E-Value=8.2e-31)
          Length = 731

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 437 PNNVFAPIPLEGRRTLSSVCPLPPLC 360
           P+ VFAP+  + RR+L  + P P  C
Sbjct: 632 PSRVFAPLTKKARRSLVFLKPSPDYC 657


>SB_22258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 549

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 437 PNNVFAPIPLEGRRTLSSVCPLPPLC 360
           P+ VFAP+  + RR+L  + P P  C
Sbjct: 146 PSRVFAPLTKKARRSLVFLKPSPDYC 171


>SB_15165| Best HMM Match : wnt (HMM E-Value=6e-28)
          Length = 224

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 437 PNNVFAPIPLEGRRTLSSVCPLPPLC 360
           P+ VFAP+  + RR+L  + P P  C
Sbjct: 125 PSRVFAPLTKKARRSLVFLKPSPDYC 150


>SB_14585| Best HMM Match : wnt (HMM E-Value=9.3e-17)
          Length = 157

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 437 PNNVFAPIPLEGRRTLSSVCPLPPLC 360
           P+ VFAP+  + RR+L  + P P  C
Sbjct: 109 PSRVFAPLTKKARRSLVFLKPSPDYC 134


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,791,489
Number of Sequences: 59808
Number of extensions: 346464
Number of successful extensions: 1094
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)