Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0273X.Seq
         (526 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC027939-1|AAH27939.1|  600|Homo sapiens SNED1 protein protein.        30   5.7  
BC025330-1|AAH25330.1| 1025|Homo sapiens C14orf43 protein protein.     29   10.0 
BC015668-1|AAH15668.1| 1024|Homo sapiens C14orf43 protein protein.     29   10.0 
BC009202-1|AAH09202.1| 1024|Homo sapiens C14orf43 protein protein.     29   10.0 
BC006511-1|AAH06511.1| 1036|Homo sapiens C14orf43 protein protein.     29   10.0 
AK127785-1|BAC87133.1| 1019|Homo sapiens protein ( Homo sapiens ...    29   10.0 
AK075506-1|BAC11659.1|  142|Homo sapiens protein ( Homo sapiens ...    29   10.0 
AF023142-1|AAD09327.1| 1157|Homo sapiens pre-mRNA splicing SR pr...    29   10.0 

>BC027939-1|AAH27939.1|  600|Homo sapiens SNED1 protein protein.
          Length = 600

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 404 GRRTLSSVCPLPPL-CSEGPSCRAVSTQNGFLSLRSWPG 291
           GR  L    PL PL C+E   CRA   +NG  S R+ PG
Sbjct: 9   GRLRLEPATPLTPLLCAERDECRAHPCRNGG-SCRNLPG 46


>BC025330-1|AAH25330.1| 1025|Homo sapiens C14orf43 protein protein.
          Length = 1025

 Score = 29.1 bits (62), Expect = 10.0
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = -3

Query: 419 PIPLEGRRTLSSVCPLPPLCSEGPSCRAVSTQNGFLSLRSWPGTRPP 279
           P P   RR LS    LPP   +G   +      G L L  WP  +PP
Sbjct: 341 PFPRRSRR-LSKEGILPPSALDGAGTQPGQEATGNLFLHHWPLQQPP 386


>BC015668-1|AAH15668.1| 1024|Homo sapiens C14orf43 protein protein.
          Length = 1024

 Score = 29.1 bits (62), Expect = 10.0
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = -3

Query: 419 PIPLEGRRTLSSVCPLPPLCSEGPSCRAVSTQNGFLSLRSWPGTRPP 279
           P P   RR LS    LPP   +G   +      G L L  WP  +PP
Sbjct: 341 PFPRRSRR-LSKEGILPPSALDGAGTQPGQEATGNLFLHHWPLQQPP 386


>BC009202-1|AAH09202.1| 1024|Homo sapiens C14orf43 protein protein.
          Length = 1024

 Score = 29.1 bits (62), Expect = 10.0
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = -3

Query: 419 PIPLEGRRTLSSVCPLPPLCSEGPSCRAVSTQNGFLSLRSWPGTRPP 279
           P P   RR LS    LPP   +G   +      G L L  WP  +PP
Sbjct: 341 PFPRRSRR-LSKEGILPPSALDGAGTQPGQEATGNLFLHHWPLQQPP 386


>BC006511-1|AAH06511.1| 1036|Homo sapiens C14orf43 protein protein.
          Length = 1036

 Score = 29.1 bits (62), Expect = 10.0
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = -3

Query: 419 PIPLEGRRTLSSVCPLPPLCSEGPSCRAVSTQNGFLSLRSWPGTRPP 279
           P P   RR LS    LPP   +G   +      G L L  WP  +PP
Sbjct: 352 PFPRRSRR-LSKEGILPPSALDGAGTQPGQEATGNLFLHHWPLQQPP 397


>AK127785-1|BAC87133.1| 1019|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45886 fis, clone OCBBF3021361, moderately
           similar to Rapa-1. ).
          Length = 1019

 Score = 29.1 bits (62), Expect = 10.0
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = -3

Query: 419 PIPLEGRRTLSSVCPLPPLCSEGPSCRAVSTQNGFLSLRSWPGTRPP 279
           P P   RR LS    LPP   +G   +      G L L  WP  +PP
Sbjct: 341 PFPRRSRR-LSKEGILPPSALDGAGTQPGQEATGNLFLHHWPLQQPP 386


>AK075506-1|BAC11659.1|  142|Homo sapiens protein ( Homo sapiens
           cDNA PSEC0204 fis, clone HEMBA1002706. ).
          Length = 142

 Score = 29.1 bits (62), Expect = 10.0
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
 Frame = -3

Query: 416 IPLEGRRTLSSVCPLPPLCSEGPSCRAVSTQNGFLSLRSWPGTRPPHR--PSLFPAQ-SV 246
           +P     + SSVC L PL   GP C+  S      SL  W   +   +  PSL P     
Sbjct: 13  LPSSSSSSSSSVCLLSPLRQVGPPCQP-SPAPICSSLSGWRRVKETEKRAPSLPPPPFPP 71

Query: 245 DRLRYMRELCQY 210
           D ++ + + C+Y
Sbjct: 72  DPIQVLSQKCRY 83


>AF023142-1|AAD09327.1| 1157|Homo sapiens pre-mRNA splicing SR
           protein rA4 protein.
          Length = 1157

 Score = 29.1 bits (62), Expect = 10.0
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = -3

Query: 455 THD*AKPNNVFAPIPLEGRRTLSSVCPLPPLCSEGPSCRAVSTQNGFLSLRSWPGTRPPH 276
           TH+ A P+   A +P     T   V P P +  + PS   +  + G + L+  PG  PPH
Sbjct: 821 THESAHPSCNPACLPCSLLGT-QGVAPGPVIGLQEPSTGLLGARPGLIPLQRPPGMPPPH 879


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,319,091
Number of Sequences: 237096
Number of extensions: 1572322
Number of successful extensions: 4693
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4693
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5046825278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)