Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0273X.Seq
(526 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched famil... 29 1.5
AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched famil... 29 1.5
Z75552-4|CAA99942.1| 624|Caenorhabditis elegans Hypothetical pr... 28 4.7
U42843-2|AAM75366.1| 533|Caenorhabditis elegans Skinhead protei... 28 4.7
U42843-1|AAA83594.2| 623|Caenorhabditis elegans Skinhead protei... 28 4.7
Z71264-1|CAA95828.1| 998|Caenorhabditis elegans Hypothetical pr... 27 6.2
U70870-1|AAB51198.1| 1404|Caenorhabditis elegans CELF35-1 protein. 27 8.2
U40934-5|AAA81683.2| 1404|Caenorhabditis elegans Hypothetical pr... 27 8.2
AF003135-8|AAK18984.1| 235|Caenorhabditis elegans Hypothetical ... 27 8.2
AC025721-2|AAK29901.3| 976|Caenorhabditis elegans Hypothetical ... 27 8.2
>AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched family
protein 3, isoform b protein.
Length = 1361
Score = 29.5 bits (63), Expect = 1.5
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 274 RCGGLVPG-QERRERNPF*VETARHDGPSEQSGGSGQTDES 393
+ GG+ G ++R+E+ P VE + D PS S DES
Sbjct: 1316 KSGGVEGGMRKRKEKRPAEVEMSARDSPSTSSASHSSDDES 1356
>AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched family
protein 3, isoform a protein.
Length = 1358
Score = 29.5 bits (63), Expect = 1.5
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 274 RCGGLVPG-QERRERNPF*VETARHDGPSEQSGGSGQTDES 393
+ GG+ G ++R+E+ P VE + D PS S DES
Sbjct: 1313 KSGGVEGGMRKRKEKRPAEVEMSARDSPSTSSASHSSDDES 1353
>Z75552-4|CAA99942.1| 624|Caenorhabditis elegans Hypothetical
protein W04D2.4 protein.
Length = 624
Score = 27.9 bits (59), Expect = 4.7
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = -1
Query: 478 VAHPARKRHTIEQSLTTCSLQFRLKADVHSHLSVHCRHFVQKDRHVVQF 332
V+HP K+ L CS +F + + HSHL + H V D H ++F
Sbjct: 61 VSHPQLKKRFYCCGL--CSSEFITRPEFHSHLRI--EHDVLPDVHSMEF 105
>U42843-2|AAM75366.1| 533|Caenorhabditis elegans Skinhead protein
1, isoform c protein.
Length = 533
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/41 (26%), Positives = 25/41 (60%)
Frame = -1
Query: 274 GLLYSQLNLSIDCDICESCASINLSRLLIRGSSTPSDTFSV 152
G++Y+Q NL+ ++ +SC +++S + ++ P F+V
Sbjct: 241 GIVYNQANLTEMQEMRDSCNQVSISTIPTTSTAQPETLFNV 281
>U42843-1|AAA83594.2| 623|Caenorhabditis elegans Skinhead protein
1, isoform a protein.
Length = 623
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/41 (26%), Positives = 25/41 (60%)
Frame = -1
Query: 274 GLLYSQLNLSIDCDICESCASINLSRLLIRGSSTPSDTFSV 152
G++Y+Q NL+ ++ +SC +++S + ++ P F+V
Sbjct: 331 GIVYNQANLTEMQEMRDSCNQVSISTIPTTSTAQPETLFNV 371
>Z71264-1|CAA95828.1| 998|Caenorhabditis elegans Hypothetical
protein K07G5.1 protein.
Length = 998
Score = 27.5 bits (58), Expect = 6.2
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = -1
Query: 295 QEQGHRTGLLYSQLNLS---IDCDICESCASINLSRLLIRGSSTPSDTFSVFPTTFHD 131
Q + TGL+ + +S ID + S NL +L +R S P D ++ + FH+
Sbjct: 219 QYSAYFTGLICDAVRVSSEVIDVVLSVIRKSQNLKKLQLRSCSLPKDFITLLASAFHN 276
>U70870-1|AAB51198.1| 1404|Caenorhabditis elegans CELF35-1 protein.
Length = 1404
Score = 27.1 bits (57), Expect = 8.2
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = -3
Query: 392 LSSVC-PLPPLCSEGPSCRAVSTQNGFLSL-RSWP 294
L S+C P P C + P+ + V++ + FLS+ R +P
Sbjct: 496 LRSICAPYRPFCGQCPNLQIVNSDHHFLSIPRHYP 530
>U40934-5|AAA81683.2| 1404|Caenorhabditis elegans Hypothetical
protein F35H10.10 protein.
Length = 1404
Score = 27.1 bits (57), Expect = 8.2
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = -3
Query: 392 LSSVC-PLPPLCSEGPSCRAVSTQNGFLSL-RSWP 294
L S+C P P C + P+ + V++ + FLS+ R +P
Sbjct: 496 LRSICAPYRPFCGQCPNLQIVNSDHHFLSIPRHYP 530
>AF003135-8|AAK18984.1| 235|Caenorhabditis elegans Hypothetical
protein W03F11.1 protein.
Length = 235
Score = 27.1 bits (57), Expect = 8.2
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = -3
Query: 305 RSWPGTR-P-PHRPSLFPAQSVDRLRYMRELCQ 213
R +PGTR P PH ++F S D Y++ CQ
Sbjct: 87 RCYPGTRIPYPHDHTMFLECSTDGTEYIKRYCQ 119
>AC025721-2|AAK29901.3| 976|Caenorhabditis elegans Hypothetical
protein Y48G8AL.10 protein.
Length = 976
Score = 27.1 bits (57), Expect = 8.2
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 12/53 (22%)
Frame = -1
Query: 430 TCSLQFRLKADVHSHLSVH--------C----RHFVQKDRHVVQFQLKTGSSP 308
TCS+ FR+K+ + +H+ H C + F +K VV ++ TG P
Sbjct: 896 TCSMSFRVKSTLTTHMQTHSDAPPQYQCTVCDKSFYEKKTLVVHMRIHTGEMP 948
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,022,732
Number of Sequences: 27780
Number of extensions: 247910
Number of successful extensions: 818
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -