Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0273X.Seq
         (526 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    25   0.63 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   1.4  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   1.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   3.3  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   5.8  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   7.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   7.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.7  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 24.6 bits (51), Expect = 0.63
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 338 AVSTQNGFLSLRSWPGTRPPHRPSLFP 258
           ++  ++G +S  S PGT   H P+ FP
Sbjct: 382 SIRNRSGLVSGSSTPGTGREHDPAKFP 408


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 457 RHTIEQSLTTCSLQFRLKADVHSHLSVHC 371
           R+T E  LTTCS  F L  D  + + V C
Sbjct: 196 RYTTEGFLTTCSFDF-LTDDEDTKVFVTC 223


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 457 RHTIEQSLTTCSLQFRLKADVHSHLSVHC 371
           R+T E  LTTCS  F L  D  + + V C
Sbjct: 196 RYTTEGFLTTCSFDF-LTDDEDTKVFVTC 223


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 440 LLNRVSFTSWMRYLACWSTYT 502
           LL++  F  W++ LA W  ++
Sbjct: 645 LLDKFFFPKWLQVLALWLNHS 665


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 149 KDAKRIGGRRTPPN 190
           +DA+ + G R PPN
Sbjct: 149 RDARIVNGTRQPPN 162


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/43 (23%), Positives = 18/43 (41%)
 Frame = -1

Query: 463 RKRHTIEQSLTTCSLQFRLKADVHSHLSVHCRHFVQKDRHVVQ 335
           R    + Q++ TC     L+ D  S ++    H V   + + Q
Sbjct: 101 RNTPEVHQAINTCQPSIPLEPDFTSDVTERDNHLVNAFKTLTQ 143


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 211 YWHNSRIYRNRSTD*AGNREGRCGGLVPG 297
           Y++  +  RNR+     NR+   G + PG
Sbjct: 363 YYNIFKALRNRARKARANRKPNLGDIKPG 391


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 439 FAQSCVFYELDALPGVLEHIHAHMFHP 519
           F+ SC     D +PG LE I +   HP
Sbjct: 75  FSSSC-----DPVPGNLEQIGSRPLHP 96


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,218
Number of Sequences: 438
Number of extensions: 2986
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14722920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)