Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0273X.Seq
         (526 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g48250.1 68414.m05388 hypothetical protein                          33   0.12 
At5g55820.1 68418.m06956 expressed protein                             31   0.36 
At4g04980.1 68417.m00724 hydroxyproline-rich glycoprotein family...    31   0.63 
At5g03800.1 68418.m00347 exostosin family protein / pentatricope...    29   1.4  
At4g35400.1 68417.m05028 hypothetical protein                          27   5.8  
At3g06860.1 68416.m00814 fatty acid multifunctional protein (MFP...    27   5.8  
At2g42930.1 68415.m05320 glycosyl hydrolase family protein 17 si...    27   5.8  
At4g11540.1 68417.m01851 DC1 domain-containing protein contains ...    27   7.7  

>At1g48250.1 68414.m05388 hypothetical protein
          Length = 354

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +3

Query: 48  IVHNSRALVAEVVDVLKLGK--EIGEEIIASWNVVGKTLNVSEG 173
           ++H S  LV + V+ L  G+  EIGEE++   NVV ++    EG
Sbjct: 17  MLHESENLVGDGVEALPRGERDEIGEEVVGETNVVSESCGGEEG 60


>At5g55820.1 68418.m06956 expressed protein
          Length = 1826

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
 Frame = +2

Query: 218 TTLAYIAIDRQIELGIEKAGAVALFLAKNGGRGTRFELKLHDMTV-LLNKVAAVDRQMRV 394
           TT A +  DR+    ++K+ + A+F  K   RG    +K+ ++ V +  +   +  Q++ 
Sbjct: 9   TTTAKVLKDREKRHRMKKSRSSAMFSVKENPRGKTANVKIENLFVQIFERKRRIVEQVQQ 68

Query: 395 YVGLQAELERTRC*ALLNRVSFTSWM 472
            V L  +   ++C  LL  VS  SW+
Sbjct: 69  QVDLYDQHLASKC--LLAGVSPPSWL 92


>At4g04980.1 68417.m00724 hydroxyproline-rich glycoprotein family
           protein Common family members: At4g18570, At3g25690,
           At5g61090 [Arabidopsis thaliana]
          Length = 681

 Score = 30.7 bits (66), Expect = 0.63
 Identities = 27/72 (37%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
 Frame = -3

Query: 383 VCPLPPLCSEGPSCRAVSTQNGFLSLRSWPGTRPP---HR-PSLFPAQSVDRLRYMRELC 216
           V P PPL S       VST N   SLRS P   PP   H+ P+  P   + +     E C
Sbjct: 296 VPPPPPLTSPQTPSPTVSTFNTKSSLRSQPPPPPPSPEHKAPAPPPPPPMSKASESGEFC 355

Query: 215 QY*SFTSSD*GE 180
           Q+ S T S  G+
Sbjct: 356 QF-SKTHSTNGD 366


>At5g03800.1 68418.m00347 exostosin family protein /
           pentatricopeptide (PPR) repeat-containing protein
           contains Pfam profiles: PF03016 exostosin family,
           PF01535 PPR repeat
          Length = 1388

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = +3

Query: 87  DVLKLGKEIGEEIIASWNVVGKTLNVSEG 173
           DVLKL  EI +  +ASWN V  +L V EG
Sbjct: 236 DVLKLFDEIPQRDVASWNTVVSSL-VKEG 263


>At4g35400.1 68417.m05028 hypothetical protein 
          Length = 76

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +3

Query: 48  IVHNSRALVAEVVDVLKLGK--EIGEEIIASWNVVGKTLNVSEG 173
           ++H S  LV + V+    G+  EIGEE+    NVV ++    EG
Sbjct: 17  MLHESENLVGDGVEAPPRGERDEIGEEVGGETNVVSESCGGEEG 60


>At3g06860.1 68416.m00814 fatty acid multifunctional protein (MFP2)
           identical to fatty acid multifunctional protein (AtMFP2)
           GB:AF123254 [gi:4337027] (Arabidopsis thaliana) (fatty
           acid beta-oxidation); contains Pfam profiles PF02737
           (3-hydroxyacyl-CoA dehydrogenase, NAD binding domain),
           PF00378 (enoyl-CoA hydratase/isomerase family protein),
           PF00725 (3-hydroxyacyl-CoA dehydrogenase)
          Length = 725

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 30  ILVLLAIVHNSRALVAEVVDVLKLGKEIGEEIIASWNVVGKTLN 161
           I+ LL IV  +      +VD+L +GK+I +  +   N  G  +N
Sbjct: 456 IMPLLEIVRTNHTSAQVIVDLLDVGKKIKKTPVVVGNCTGFAVN 499


>At2g42930.1 68415.m05320 glycosyl hydrolase family protein 17
           similar to elicitor inducible chitinase Nt-SubE76
           GI:11071974 from [Nicotiana tabacum]
          Length = 134

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 423 RSNSA*RPTYTLICLSTAATLFRRTVMSCSFNSK 322
           + N++  PTYTL C+      FRR + S  +  K
Sbjct: 28  QQNTSIIPTYTLWCMENPYAYFRRVISSLKWACK 61


>At4g11540.1 68417.m01851 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 525

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 436 GFAQSCVFYELDALPGVLEHIHAHMFHP 519
           GF   C F +LD L G++   + H  HP
Sbjct: 373 GFMYQCDFMKLDVLCGLVSEPYIHPGHP 400


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,367,188
Number of Sequences: 28952
Number of extensions: 229849
Number of successful extensions: 708
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)