Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0272.Seq
         (597 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    25   0.64 
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   1.5  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   2.0  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    22   4.5  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   6.0  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   7.9  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   7.9  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 24.6 bits (51), Expect = 0.64
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -1

Query: 447 VRASVRGARTFRCI 406
           +R  ++GARTFRC+
Sbjct: 35  LREGLKGARTFRCV 48


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 478 APNLYLCICVRACLCARRP 422
           A N   C C+R C  A+RP
Sbjct: 184 ASNGNKCCCLRTCSSAKRP 202


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -1

Query: 483 CRLLTYICVYVCVRASVRGARTFRCIHYIY 394
           C L+  +C+Y   RA +     F C   +Y
Sbjct: 290 CALIILLCIYYFCRAFIIFPTHFYCAFSLY 319


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 195 CVNDLIKYYYIS 160
           C+N LI YY+IS
Sbjct: 391 CLNTLIFYYHIS 402


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -3

Query: 112 LLLSYHV*FILL*NFTKDILKINVSSF 32
           LL+++H+   L+ +  K +LK  +S+F
Sbjct: 376 LLITFHIGSQLVLHTVKTVLKTTMSTF 402


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/37 (24%), Positives = 17/37 (45%)
 Frame = -3

Query: 550 NCSGTKGRRPVCVACDGISVGLVSAPNLYLCICVRAC 440
           N + T      CV  DG+  G+++A  +     ++ C
Sbjct: 143 NATNTVWSHCQCVLADGVERGILTANRMIPGPSIQVC 179


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/37 (24%), Positives = 17/37 (45%)
 Frame = -3

Query: 550 NCSGTKGRRPVCVACDGISVGLVSAPNLYLCICVRAC 440
           N + T      CV  DG+  G+++A  +     ++ C
Sbjct: 143 NATNTVWSHCQCVLADGVERGILTANRMIPGPSIQVC 179


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,204
Number of Sequences: 336
Number of extensions: 3195
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)