Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0272.Seq
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    29   0.68 
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha...    27   2.7  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    25   6.3  

>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -1

Query: 165 ISIVGKNLILSKWKV---NPLCYYLTTFDSFCYKIL 67
           +S + KN +L   K+    P+C+ +T + SF Y IL
Sbjct: 348 LSDIAKNYLLVPMKLLFTEPICFLITLYSSFVYAIL 383


>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +3

Query: 180 LSHLHKYNYNAVSINL 227
           +S+LH Y YNA++INL
Sbjct: 189 VSNLHGYTYNALNINL 204


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 489 GSCRLLTYICVYVCVRASVRGARTFRCIHYIYL*ST 382
           GS R+LT+    + +R +   A  F  IH+  L ST
Sbjct: 23  GSSRILTFFLNQLTIRLTSPSAYAFSSIHFEILQST 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,314,953
Number of Sequences: 5004
Number of extensions: 47285
Number of successful extensions: 103
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)