Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0272.Seq
         (597 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0158 + 2332381-2333211                                           29   3.7  
08_01_0426 - 3757110-3758405                                           28   4.9  
01_06_1276 - 35918954-35919106,35919220-35919325,35919477-359195...    28   4.9  
05_01_0199 + 1434040-1434414,1434808-1435127,1435889-1435928           28   6.5  
02_05_1236 + 35141404-35142731,35142753-35143089,35143228-351433...    28   6.5  
02_04_0586 + 24100329-24100754,24102367-24102429,24102826-24103728     28   6.5  

>09_01_0158 + 2332381-2333211
          Length = 276

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = -3

Query: 346 VYSVSASSQPEATPR*LAPCTFINVINV*KN*LT 245
           V ++SA+    A PR LA C ++NVI++  N LT
Sbjct: 127 VLNLSANRLSGAIPRDLARCAYLNVIDLHANQLT 160


>08_01_0426 - 3757110-3758405
          Length = 431

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 22/62 (35%), Positives = 31/62 (50%)
 Frame = -3

Query: 526 RPVCVACDGISVGLVSAPNLYLCICVRACLCARRPHLPMHTLYIFIKYVRKKIIGKSQKN 347
           RPV  A  G  V +  APNL+L + V     A     P+ TL+   ++  KK  GK++  
Sbjct: 98  RPVIGASQGWLVTVDEAPNLHL-VLVNPITGATAALPPITTLHNVERFTSKK--GKTRYR 154

Query: 346 VY 341
           VY
Sbjct: 155 VY 156


>01_06_1276 -
           35918954-35919106,35919220-35919325,35919477-35919574,
           35919693-35919757,35919877-35920033,35920177-35920268,
           35920379-35920493,35920574-35920622,35920705-35920858,
           35920993-35921019,35921530-35921707,35922326-35922685,
           35922979-35922987,35923170-35923238
          Length = 543

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +3

Query: 417 RCGRRAQRHARTHIHKYKLGADTSPTLIPSHATHTGRLPFVPLQLNFSYIVKL 575
           R G+R Q+ A    H+   G   + T  P H      LP +PL  NF  +  L
Sbjct: 19  RLGKRVQKLANLAFHRTNQGCADANTTRPDHLLL--ELPLLPLFPNFPNLASL 69


>05_01_0199 + 1434040-1434414,1434808-1435127,1435889-1435928
          Length = 244

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +3

Query: 357 DFPMIFFLTYFINIYSVCIGRCGRRAQRHARTHIHKYKLGADTSPTLIP 503
           D+  I  L   + +  +CI  CG  A R+AR  + +Y  G +    + P
Sbjct: 178 DWHKISVLNVMVLVVLICICACGCCAFRNARRSVSEYPYGVNRMHKIHP 226


>02_05_1236 +
           35141404-35142731,35142753-35143089,35143228-35143305,
           35143395-35143703,35144449-35144572,35144620-35144789
          Length = 781

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -2

Query: 383 REKKNHWKIPKKCVFCVRK*PARGDASLARSVYIH*-CNKCLKKLTNSVKRIN 228
           R+KK   +    C     +  A G  +   SV IH  CN C+KK+ + +KRI+
Sbjct: 670 RKKKVAGEFSGLCSSWQERCKANGLKTSVFSVDIHCKCNGCIKKINDGMKRIS 722


>02_04_0586 + 24100329-24100754,24102367-24102429,24102826-24103728
          Length = 463

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -1

Query: 492 SGSCR-LLTYICVYVCVRASVRGARTFRC 409
           SG CR  L Y+ +   + A VRGA TFRC
Sbjct: 365 SGYCRSALDYLELQPDLSALVRGAHTFRC 393


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,434,776
Number of Sequences: 37544
Number of extensions: 256572
Number of successful extensions: 562
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)