Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0272.Seq
         (597 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32622| Best HMM Match : Ank (HMM E-Value=2.2e-05)                   28   6.6  
SB_31490| Best HMM Match : Aa_trans (HMM E-Value=4.9e-31)              27   8.7  
SB_29211| Best HMM Match : 7tm_1 (HMM E-Value=8e-20)                   27   8.7  
SB_10493| Best HMM Match : Keratin_B2 (HMM E-Value=3.4)                27   8.7  
SB_2556| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.7  

>SB_32622| Best HMM Match : Ank (HMM E-Value=2.2e-05)
          Length = 509

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +2

Query: 410 HRKVRAPRTEARTHTYTQI*VRSRHEPDTYTITCDAHRTSSLCTATV 550
           H  V AP      H+ + I  RS+H+ D  T+T  A       T T+
Sbjct: 402 HVTVTAPTRSRHGHSTSTITSRSQHQHDHVTVTAPAQSRHGHSTNTI 448


>SB_31490| Best HMM Match : Aa_trans (HMM E-Value=4.9e-31)
          Length = 974

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -3

Query: 520 VCVACDGISVGLVSAPNLYLCI-CVRACLCARR 425
           VCV    +SV  V+  NLYL + C+RAC+C  R
Sbjct: 147 VCVLVS-VSVS-VTCVNLYLPVTCLRACVCLSR 177


>SB_29211| Best HMM Match : 7tm_1 (HMM E-Value=8e-20)
          Length = 319

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = +3

Query: 318 GWLLADTEYTFFWDFPMIFFLTYFINIYSVCIGRCGRRAQRHARTHIHKYKLGADTSPTL 497
           G+    T + FF++F   FFL       ++ + R  R  Q+ + T    +K GA     +
Sbjct: 156 GYKALQTAFLFFFEFLPSFFLVMMFVRMAMVVKRQRRSVQQQSHTLQFNHKHGA-----I 210

Query: 498 IPSH 509
           +P+H
Sbjct: 211 LPAH 214


>SB_10493| Best HMM Match : Keratin_B2 (HMM E-Value=3.4)
          Length = 119

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -3

Query: 520 VCVACDGISVGLVSAPNLYLCI-CVRACLCARR 425
           VCV    +SV  V+  NLYL + C+RAC+C  R
Sbjct: 77  VCVLVS-VSVS-VTCVNLYLPVTCLRACVCLSR 107


>SB_2556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 275

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +3

Query: 387 FINIYSVCIGRCGRRAQRHARTHIHKYKLGADTSPTLIPSHATHTGR 527
           F N+      RC R ++  +RT++H ++ G  T P++ P   T+  +
Sbjct: 130 FANVVHEFRDRCSRISRTISRTYVHMFESG--TVPSVQPGRKTNNNQ 174


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,668,655
Number of Sequences: 59808
Number of extensions: 340549
Number of successful extensions: 973
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)